Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O24
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                  153   3e-38
SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   6e-07
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)                   48   2e-06
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    43   1e-04
SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)                    28   2.2  
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  27   3.8  
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  27   3.8  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    27   3.8  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)                    27   3.8  
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)                   27   6.7  
SB_52814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  27   6.7  
SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score =  153 bits (372), Expect = 3e-38
 Identities = 68/94 (72%), Positives = 80/94 (85%)
 Frame = +2

Query: 38  GGDTIFGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQL 217
           GGDTIFGKI+RKEIPA+ ++EDDQC+AF D+NPQAPTH+LVIP+KPI QLS A D DEQL
Sbjct: 3   GGDTIFGKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQL 62

Query: 218 LGHLLIVARKVATQEGLDKSGFRLVINDGKNGAQ 319
           LG LLIVARKVA  + L   G+R++INDGKNG Q
Sbjct: 63  LGRLLIVARKVAAMQNLANDGYRIIINDGKNGGQ 96


>SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = +2

Query: 8   EVELAKSAAPGGDTIFGKILRKEIPAKFVYEDDQ 109
           E E A+SA PGGDTIF +I+R ++PA F++EDD+
Sbjct: 49  EEEKAQSAVPGGDTIFSRIIRGDVPATFIHEDDK 82


>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
          Length = 161

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +2

Query: 53  FGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQLLGHLL 232
           FG I+ K  P+   Y  +  + F ++ P  P H+LV    P+  + +  D  +  +  L 
Sbjct: 10  FGHIILK--PSVVFYRSNLSIGFVNIKPVLPGHVLV---SPVRVVKRFVDLTQDEVSDLF 64

Query: 233 IVARKVA--TQEGLDKSGFRLVINDGKNGAQSVYHLHVHVL 349
           I ++++A   +     +   + I DG    QSV H+HVH+L
Sbjct: 65  ISSQRIAGVVEREFGATSLTISIQDGPEAGQSVQHVHVHIL 105


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/36 (63%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +2

Query: 8   EVELAKSAAP--GGDTIFGKILRKEIPAKFVYEDDQ 109
           EVE AK AA   G  TIF KIL KEIPA  +YEDD+
Sbjct: 51  EVEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDDK 86


>SB_8183| Best HMM Match : rve (HMM E-Value=1.7e-10)
          Length = 785

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 83  AKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQLLGHLLIVARK 247
           A+F + D+Q  AF D+     T  ++IP KP  Q     D     LG  L   RK
Sbjct: 510 ARFEWNDEQQKAFEDLKRAITTAPVLIPYKPERQTLIICDGSPTGLGGALKPTRK 564


>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 276

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 305 CHHLLLNGNQTCPAPPGLPP 246
           C+H LL    T P PP LPP
Sbjct: 50  CNHQLLMVGPTVPIPPTLPP 69


>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 305 CHHLLLNGNQTCPAPPGLPP 246
           C+H LL    T P PP LPP
Sbjct: 274 CNHQLLMVGPTVPIPPTLPP 293


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 326  IRSVPHSCHHLLLNGNQTCPAPPGLPPYERQST 228
            I  + H  HH +L      PAPP  PP   QST
Sbjct: 1442 ITHLQHIVHHKILPPPPPPPAPPCPPPCHVQST 1474


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  LRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKP 175
           L++++  K   E D C   +DV    P+H  V PR P
Sbjct: 290 LKRKVNEKLHRESDDCAHNNDVISSRPSHEGVEPRDP 326


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 332 SDIRSVPHSCHHLLLNGNQTCPAPPGLPPYERQST 228
           +DIR             N T   PP LPPY+  ST
Sbjct: 736 NDIRKTQRQTKMYTTQHNNTSTLPPPLPPYQPVST 770


>SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)
          Length = 554

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 179 SQLSKAGDEDEQLLGHLLIVARKVATQEGLDKSGFRLVINDGKNGAQSVYHLHV 340
           S+   +  +D  ++G  L + R++ T +GL  S   +++   ++G Q  YH ++
Sbjct: 251 SRAETSTPQDPTVVG--LPLVRELHTSQGLSASASEVILQGWRSGTQKQYHSYL 302


>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 83  AKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQ 184
           A+F + D+Q  AF D+     T  ++IP KP  Q
Sbjct: 502 ARFEWNDEQQKAFEDLKRAITTAPVLIPYKPERQ 535


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 62  ILRKEIPAKFVYEDDQCVAFHDVN 133
           I  +E+P+  V E ++CVAF D N
Sbjct: 158 ISARELPSDLVGESNECVAFADGN 181


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 269 PAPPGLPPYERQSTDDPATAHLHLQL*KAVKLASWVSQGY 150
           PAP  +PP    S +      +  +L K + LASWV  GY
Sbjct: 764 PAPE-IPPRNYSSPEFAEPRSIVCRLQKGLVLASWVFSGY 802


>SB_56317| Best HMM Match : DUF1273 (HMM E-Value=1.2)
          Length = 475

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 179 KLASWVSQGYGLVLVGSHHEKLHI 108
           K+A WVS+GYG  +V      L+I
Sbjct: 186 KIAQWVSEGYGWTVVSVDGHYLNI 209


>SB_52814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -3

Query: 301 IIYY*TETRLVQPLLGCHLTSDNQQMTQQLLIFISSFRKL*N 176
           +IY+ T   L   LLGCHLTS  + MT+   + IS+  K+ N
Sbjct: 34  LIYFDT---LFDWLLGCHLTSLKRLMTE--CVHISASHKIVN 70


>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 447

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 317 VPHSCHHLLLNGNQTCPAPPGLPPY 243
           +PHS H   L+ + T P+  G PPY
Sbjct: 262 LPHSLHITYLDKSDTGPSFSGQPPY 286


>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 56  GKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQ 184
           G++  K+  A+F + D+Q  AF D+  +A T  ++IP KP  Q
Sbjct: 508 GRLTPKD--ARFEWNDEQQKAFEDLK-RAITTAVLIPYKPERQ 547


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -2

Query: 374 EATPIDVHPGRERASD--IRSVPHSCHHLLLNGNQTCPAPPGLPPYERQSTDDPATAHLH 201
           + T I + PG    S+  +++ P +  H          + PG PP   Q   D A   LH
Sbjct: 609 KGTVIPMKPGEGSLSESSVKAPPVTPQHAYYMSRLRSVSVPGKPPLTVQGNIDKAEGGLH 668

Query: 200 L 198
           L
Sbjct: 669 L 669


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 62  ILRKEIPAKFVYEDDQCVAFHDVN 133
           I  +E+P+  V E ++CVAF D N
Sbjct: 18  ISNRELPSDLVGEANECVAFADGN 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,627
Number of Sequences: 59808
Number of extensions: 300240
Number of successful extensions: 736
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)