Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O24
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 302 HHLLLNGNQTCPAPPGLPPYERQSTDDPATAHLHLQ 195
           HH    G+Q     P  PPY R    + AT + H Q
Sbjct: 64  HHYGAAGSQQDMPYPRFPPYNRMDMRN-ATYYQHQQ 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 324 YITCTFTSWVDVNWSG 371
           +I C F  W  V W+G
Sbjct: 217 WIMCYFCIWKGVKWTG 232


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 324 YITCTFTSWVDVNWSG 371
           +I C F  W  V W+G
Sbjct: 270 WIMCYFCIWKGVKWTG 285


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 281 NQTCPAPP 258
           NQ+CP+PP
Sbjct: 615 NQSCPSPP 622


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 296  LLLNGNQTCPAPPGLPP 246
            L++   +  P PP LPP
Sbjct: 1100 LVMIHEENAPLPPALPP 1116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,697
Number of Sequences: 438
Number of extensions: 2872
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)