Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O23
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.31
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 28 0.42
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.3
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 2.9
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 3.9
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 5.1
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 6.8
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 9.0
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 24 9.0
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 24 9.0
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 24 9.0
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 24 9.0
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 9.0
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.31
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 111 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 233
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.42
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 96 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 242
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 264 DNRFCTISRILQQLSYWCSYRCW 196
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 129 QDVDQVNVDDEYYKIGKDYDVEANIDN 209
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 2.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 96 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 245
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 192 EANIDNYTNKKAVEEFLKLYRIGYLPK 272
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 5.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 96 VERQKKVLSLFQDVDQVNVDDEYY 167
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 6.8
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 129 QDVDQVNVDDEYYKIGK 179
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 VVSPKTYHFKTK-DVDAVFVERQKKVLSLFQDVDQVNVD 155
V+ PKT+H+K + F + QKK+ DV D
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKL--FINDVSTTKYD 270
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 23.8 bits (49), Expect = 9.0
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +3
Query: 105 QKKVLSLFQDVDQVNVDDEY 164
++++ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 312 LPLAFGRRWRTHSTWEDNRFCTISRILQQLSYWCSYRC 199
LP AF R H + E+ R + ++YWC Y C
Sbjct: 82 LPKAFQLRNEEHKSIEEER-------RRLMAYWCVYGC 112
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 105 QKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNK 221
Q+ + S+ D Q+++DD YKI E N D +K
Sbjct: 38 QEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSK 76
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 23.8 bits (49), Expect = 9.0
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 12 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDEYYKIGK 179
A +I +++ + +H +D V + QK+ S D D+ V DE+ +I +
Sbjct: 34 ADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDEFMQIKE 93
Query: 180 DYDVEA 197
++ ++A
Sbjct: 94 EFPMKA 99
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.8 bits (49), Expect = 9.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 150 VDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLY-RIGY 263
VD E+Y+I K+ E D+ + E LK+Y R+ Y
Sbjct: 609 VDREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAY 647
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 210 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYY 344
Y + K + + + + + +YY FS F + ++ I F YY
Sbjct: 119 YVDYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFEPEYY 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,603
Number of Sequences: 5004
Number of extensions: 26839
Number of successful extensions: 106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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