Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O23
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0033 + 27820563-27823482,27823593-27823996 30 0.68
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 4.8
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 4.8
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 27 4.8
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 6.3
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 27 6.3
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452... 27 6.3
07_03_0154 + 14509979-14512033 27 6.3
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.9 bits (64), Expect = 0.68
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 44 GVTENVSLQDKRCRRSVCGAPEKGFIPFP 130
GV N++L+ R +CG+P G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 2 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 145
PS + A + Q GV +VSL+ ++ + +K + PF C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 317 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 201
S FP + E GE+ V GK+ D + SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 81 VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKKAVEEF 239
VD V+ Q+K + +++ + +++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 240 LKLYRIGY 263
LKL +G+
Sbjct: 711 LKLPEMGF 718
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 26.6 bits (56), Expect = 6.3
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 96 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA--VEEFLKLYRIGYLP 269
V+ + +L + +V ++ KIG D D + +Y+ K+ VEE + +R +L
Sbjct: 1230 VDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRPEFLN 1289
Query: 270 KYYEFSIFYQ--KLREEAIA 323
+ E +F Q KL + IA
Sbjct: 1290 RLDEMIVFRQLTKLEVKEIA 1309
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 342 SRTSGKEQ*PLPLAFGRRWRTHSTWED 262
SRT G P P RRWR H +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430
>07_03_0475 +
18544637-18544772,18544925-18545031,18545114-18545295,
18545467-18545599,18545708-18545920
Length = 256
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 210 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIAL 326
Y NK V K+ P Y EF I+YQ+ ++ IA+
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIAV 182
>07_03_0154 + 14509979-14512033
Length = 684
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 2 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRP 142
PSSS P A + N KR +S +PE+G +P P P
Sbjct: 7 PSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERGPLPLPAAAP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,144,587
Number of Sequences: 37544
Number of extensions: 167071
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -