Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O21
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    30   0.29 
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    27   1.6  
11_06_0184 - 21006659-21009823                                         27   2.7  
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    27   2.7  
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     27   2.7  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    27   2.7  
04_04_1001 - 30020380-30021045,30021127-30021210,30022091-300221...    25   8.3  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    25   8.3  
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608...    25   8.3  

>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 238 HFSAVPSIKIAPVTQCAAVSTYFELMSEPPHSSFI*SKLSYS 113
           +FS VPS+KI   +   +   Y   + EP H   +   LSYS
Sbjct: 320 NFSRVPSMKIFDRSHNLSFKDYVSSLEEPIHQKMLTKTLSYS 361


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 140 AAMRW-LTHQFEVRAHCCTLC 199
           AA+RW LTH  E  A CC  C
Sbjct: 264 AAVRWGLTHHKESAADCCQAC 284


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 36   VEDTVVNKIVGGNDTKITQYPWLVVIEYESFDHMKLLCGGSLISS 170
            +ED +VN +  GN+T       L  I + SF HM+ L G S + S
Sbjct: 968  IEDDIVNSVALGNNTYGGDPDKLEKIVW-SFTHMEELSGVSTLQS 1011


>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 116 FDHHKPWILGDFCVISTDNFINNGVFDSTTL---VVAF*W 6
           FDHH PW+ G    +    F    VF +T L   V AF W
Sbjct: 264 FDHHCPWV-GQCIGLRNYRFFYMFVFSTTLLCLYVFAFCW 302


>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 229 AVPSIKIAPVTQCAAVSTYFELMSEPPHSSF 137
           AVPS  I     C  V   F  ++ PP +SF
Sbjct: 96  AVPSFVIVATALCMVVYVGFNFLATPPPTSF 126


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  VEDTVVNKIVGG-NDTKITQYPWLVVIEYESFDHMKLLCGGSLI 164
           + D +VN + G  N  ++ +YPW+     + F H  +   GSL+
Sbjct: 105 INDKLVNPLTGWINVGRVKKYPWMWTDGSKGFFHCVVSGDGSLL 148


>04_04_1001 -
           30020380-30021045,30021127-30021210,30022091-30022166,
           30022241-30022353,30023678-30023683
          Length = 314

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 150 GGSLISSKYVLTAAHCVTGA 209
           G +++ ++YVLT A  VTGA
Sbjct: 196 GSAIMKNRYVLTGAAWVTGA 215


>02_01_0055 +
           410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 57  KIVGGNDTKITQYPWLVVIEYESFDHMKLL 146
           KI+   D +  +   +++++YE FD +KLL
Sbjct: 317 KIIAEGDDRDVENRLVMLLDYEKFDLIKLL 346


>01_07_0024 -
           40559423-40559863,40559959-40560192,40560546-40560842,
           40561048-40561230,40561534-40561590,40561851-40561937
          Length = 432

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -2

Query: 116 FDHHKPWILGDFCVISTDNFINNGVFDSTTL---VVAF*W 6
           FDHH PW+ G    +    F    VF +T L   V  F W
Sbjct: 195 FDHHCPWV-GQCIGLRNYRFFYMFVFSTTLLCLYVFGFCW 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,057,487
Number of Sequences: 37544
Number of extensions: 148687
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)