Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O19
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0527 + 18212938-18213257,18213352-18213991                       30   1.1  
07_01_0034 + 290094-290265,290378-290793                               28   4.3  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    27   7.5  
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356     27   9.9  
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902     27   9.9  

>08_02_0527 + 18212938-18213257,18213352-18213991
          Length = 319

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 167 LNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 277
           L  + PR   R TH N  G        +TDD++S+ D
Sbjct: 144 LGAKHPRGYYRCTHRNTQGCTATKQVQRTDDDASLFD 180


>07_01_0034 + 290094-290265,290378-290793
          Length = 195

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 123 PPALASRTDAATPRTSTSDSPAPTRAS 203
           PPA++S T+     TS + SPAP+ AS
Sbjct: 145 PPAVSSPTEEMPAVTSPTGSPAPSSAS 171


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 SPPALASRTDAATPRTSTSDSPAP 191
           +PPAL   T A +P+ S+S  P P
Sbjct: 289 TPPALPPATTAPSPKNSSSSPPPP 312


>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
          Length = 480

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 119 VATGAGVENGRGHPAHLNQRQPRADPRLTHHNQSG 223
           +A GAG   GR  P H  + +  A P   H   +G
Sbjct: 4   IAGGAGSSEGRRRPRHRGEAKASAVPACYHRPSAG 38


>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
          Length = 361

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 152 GHPAHLNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 277
           G    L  + PR   R TH +  G        +TD++++V D
Sbjct: 135 GQKEILGAKHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFD 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,867,288
Number of Sequences: 37544
Number of extensions: 73885
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)