Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O19
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    31   0.55 
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
 Frame = +3

Query: 123 PPALASRTDAATPRT---STSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSP 293
           PP+    T + TP T   STSD  APT AS                     P S A   P
Sbjct: 230 PPSTTPETSSTTPSTVTSSTSDPNAPT-ASDAASGTGTGTESSDTPASSAPPTSAASGPP 288

Query: 294 AP 299
           AP
Sbjct: 289 AP 290


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/62 (22%), Positives = 21/62 (33%)
 Frame = +3

Query: 120 SPPALASRTDAATPRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAP 299
           +P    S  +A  P  +  ++PAP   S                     P S A  + AP
Sbjct: 274 TPAPATSSEEAPAPAPTAEETPAPETVSAAPEAANSYDSAGGDAATAPAPSSEAADAAAP 333

Query: 300 TE 305
           T+
Sbjct: 334 TD 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,991,306
Number of Sequences: 27780
Number of extensions: 41082
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)