Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O18
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435... 29 2.2
03_02_1021 + 13254765-13255092,13255201-13255355 29 2.2
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219... 29 3.9
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 28 5.2
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346... 28 5.2
11_03_0006 + 8878611-8878724,8879323-8879706 28 6.8
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 6.8
01_06_0487 + 29733380-29733448,29733492-29734373,29734851-297348... 28 6.8
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 27 9.0
01_01_0868 - 6780919-6783207 27 9.0
>03_06_0060 +
31341233-31342009,31342752-31342871,31343401-31343517,
31343615-31343704,31344279-31344386,31345124-31345306
Length = 464
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 307 TVLAMYHTQGAKGEIVDMDTAFAHAVD--ETLGFNRELITITGQDVNSVLSVLTKAETFV 480
T+L + T GAK +I D+ A AVD +T+G + + + ++S L K T
Sbjct: 327 TILCLPVTDGAKADIQDVKNAVGSAVDIMQTIGSSICTLLAKLSGTSILVSDLAKIATQE 386
Query: 481 RWLAVEKKYALSKM 522
R L + + LS +
Sbjct: 387 RTLMDQSRELLSTL 400
>03_02_1021 + 13254765-13255092,13255201-13255355
Length = 160
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 145 PEWF-LTQTLTWVKDHQSFVRCHVQPVAEKLEMRKVRAVNEFIAGLV 282
P+W+ L +T W +DH + +A+ L + A ++ +AGL+
Sbjct: 29 PQWWDLVKTTAWFRDHWFHEHQQLDEMADSLALHDAAADDDDLAGLL 75
>07_03_1734 +
29120474-29120705,29120839-29120949,29121854-29121966,
29122119-29124128
Length = 821
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/130 (15%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Frame = +1
Query: 73 LLKPLKKRFAFHFTGSRQTARIDRPEWFLTQTLTWVKDHQSFVRCHVQPVAEKLEMRKVR 252
L++P+ R +HF + +PE+ +D V +QP+ ++ + +
Sbjct: 306 LVQPIASRLEYHFAKWSE-----QPEFIFALVYKIARDFMGGVDDILQPLIDRARLVGLS 360
Query: 253 AVNEFIAGLVALAAERLHTVL--AMYHTQGAKGEIVDMDTAFAHAVDETLGFNRELITIT 426
A ++ G+V + L + + + A + ++ +++ H D + F++ + +
Sbjct: 361 AKESWVTGMVKMLLGYLERQIFPVLVTSYQATDDKFEVHSSWMHLNDLMITFDKRMQLLA 420
Query: 427 GQDVNSVLSV 456
+ + S+
Sbjct: 421 DSGIQKIASI 430
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +3
Query: 33 LWSRTQPLLTCSYTIETFEEKVRIPFHWISANGAHRPTGMVPHTDSDMGEGSPEFCEMPR 212
LW R +P C +++E EE V + + G RP + G P P
Sbjct: 37 LWRRRRPRSPCPWSVEKGEEVVLVHASMGNCFGGRRP-------HPNRGRCRPNQSRAPI 89
Query: 213 TACC*EIRNE 242
+CC E+R +
Sbjct: 90 QSCC-EVRQQ 98
>06_01_0487 -
3459853-3459917,3460058-3460408,3460991-3461114,
3461226-3461359,3462277-3462412,3462486-3462834,
3463994-3464000,3464058-3464226
Length = 444
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 27 RRLWSRTQPLLTCSYTIETFEEKVRIPFHWISANGAHRPT 146
RRL+ P L +Y++ ++ +I +H +S + RPT
Sbjct: 355 RRLYQLVDPRLGLNYSVRGVQKVAQICYHCLSRDTKSRPT 394
>11_03_0006 + 8878611-8878724,8879323-8879706
Length = 165
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +3
Query: 93 KVRIPFHWISANGAHRPTGMVPHTDSDMGEGSPEFCEMPRTACC 224
+ R P H +A P G PH D G E E P C
Sbjct: 102 RARTPLHRYAAPRVPEPAGAAPHGDVFPSAGEGERAEHPPRPTC 145
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 145 PEWFLTQTLTWVKD--HQSFVRCHVQPVAEKLEMRKVRAVNEFIA 273
PEW+ +Q + ++KD H SFV+ + + + E KVR +N +A
Sbjct: 430 PEWYFSQKIDYLKDKVHPSFVKDR-RAMKREYEEFKVR-INGLVA 472
>01_06_0487 +
29733380-29733448,29733492-29734373,29734851-29734884,
29735177-29735346,29735446-29735784
Length = 497
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 278 SSHWQRNGFTQY*QCITHKVQRGKLSTW 361
S+ W R+GF +Y IT++V + L W
Sbjct: 322 SADWLRSGFKEYQHLITNEVAQKMLLAW 349
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 122 RDPVKWNANLFFKGFNS 72
RD +KW A+ F K FNS
Sbjct: 203 RDTIKWGADYFLKTFNS 219
>01_01_0868 - 6780919-6783207
Length = 762
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +1
Query: 73 LLKPLKKRFAFHFTGSRQTARIDRPEWFLTQTLTWVKDHQSFVRCHVQPVAEKLEMRKVR 252
+ K L + F+ T R T PEW Q +T D SF + ++ + K+R
Sbjct: 607 MAKLLGREFSAALTTIRGTIGYLAPEWISGQAITHKADVYSFGVVLFEIISGRRSTEKIR 666
Query: 253 AVNEFIAGLVALAAERLHTVLAM 321
N + L A A VL +
Sbjct: 667 HGNHWYFPLYAAAKVNEGDVLCL 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,998
Number of Sequences: 37544
Number of extensions: 381966
Number of successful extensions: 982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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