Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O18
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33926| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   7e-23
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 30   1.7  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   5.3  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.0  
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)                 27   9.2  

>SB_33926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score =  104 bits (249), Expect = 7e-23
 Identities = 53/119 (44%), Positives = 76/119 (63%)
 Frame = +1

Query: 58  LPVRILLKPLKKRFAFHFTGSRQTARIDRPEWFLTQTLTWVKDHQSFVRCHVQPVAEKLE 237
           LP+  LLKPL+KRF FHF G +QT  +++PEW+ TQ L W+K H  F++  VQPV +K E
Sbjct: 20  LPLDWLLKPLRKRFKFHFYGKKQTNNLEKPEWYFTQILNWIKSHGDFLQHTVQPVLDKAE 79

Query: 238 MRKVRAVNEFIAGLVALAAERLHTVLAMYHTQGAKGEIVDMDTAFAHAVDETLGFNREL 414
           +  + A  EFI GL+A+  E+      M H   +  E++  +  F+H VDETL F++EL
Sbjct: 80  LSFIDAKLEFIRGLLAVTTEK------MIH---SLPELLADEAVFSHFVDETLLFHKEL 129


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 264 IHCRSRRIGSGTASHSTSNVSHTRCKGGNCRHGHRFRTRSR*NIRV*QRTDNDNRSRCEQ 443
           + C   + GSG A +  SN S TR K    +  H   TR     +  + +D D ++ C  
Sbjct: 464 VQCVEVKDGSGNAENGKSNRSKTR-KSERAKSFHLACTRESVEYKSSESSDEDGQTFC-T 521

Query: 444 CPFCTH 461
           CP   H
Sbjct: 522 CPVRLH 527


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +3

Query: 138 RPTGMVPHTDSDMGEGSPEFCEMPRTACC*EIRNEKSQSC**IHCRSRRIGSGTASHSTS 317
           RP+  V  T     E S   C  P T C  +     S+S     CR  + GS T    + 
Sbjct: 675 RPSKSVSDTPCRPSEVSVTPCVDPVTPCVSDTLCRPSESVSDTLCRPSKSGSDTLCRPSE 734

Query: 318 NVSHTRCK 341
           +VS T C+
Sbjct: 735 SVSDTLCR 742


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 273 RSRRIGSGTASHSTSNVSHTRCKGGNCRHGHRFRTRSR 386
           RS    S  +SHS+ + SHT   G   R+  R  +RS+
Sbjct: 203 RSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSRSASRSQ 240


>SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 531 RLIHLGQCIFLLNSQPPYECFRFSEYRKDTVHILTCYR 418
           +L+H G    L+N  P     RF E+RK  VH+++ YR
Sbjct: 260 KLLHFGNS--LVN--PIIYSLRFPEFRKAAVHVMSWYR 293


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 3   RLST*SYYRRLWSRTQPLLTCSYTIETFEEKVRIPFHWIS---ANGAHRPTGMVPHTDSD 173
           R S+    R  WS  Q      Y+  ++     IP   ++   + G  R    + H D+D
Sbjct: 356 RTSSVDKRRGNWSCNQKSFN-DYSTRSYTSTSSIPILGVTLVDSEGNKRTINPLHHDDAD 414

Query: 174 MGEGSPEFCEMPRTACC 224
             EGS + C+  RT  C
Sbjct: 415 YCEGSLKGCKATRTDMC 431


>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 425

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 273 RSRRIGSGTASHSTSN---VSHTRCKGGNCRHGHRFRTRSR*NIRV*QRTDNDNRSRCEQ 443
           R R      A  ST N   +SH+R K  NC++  R  ++S   +R  +  D D   RC  
Sbjct: 346 RCRTCFRAFAQSSTRNKHELSHSREKPFNCKYCDRSFSQSSTVLRHMRTHDKDKSYRCVH 405

Query: 444 C 446
           C
Sbjct: 406 C 406


>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
          Length = 811

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 202 RCHVQPVAEKLEMRKVRAVNEFIAGLVAL 288
           R H++P  EKL +    A +++  GL+A+
Sbjct: 767 RRHIRPTGEKLSLNNTSATDDYEPGLMAV 795


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,454
Number of Sequences: 59808
Number of extensions: 450425
Number of successful extensions: 1349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)