Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O18
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1 prot...   119   7e-27
AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting prote...   119   7e-27
AK021847-1|BAB13910.1|  416|Homo sapiens protein ( Homo sapiens ...    56   1e-07
AC073073-1|AAQ96849.1|  416|Homo sapiens unknown protein.              56   1e-07
BC048270-1|AAH48270.2|  584|Homo sapiens TTC7B protein protein.        30   5.7  
BC035865-1|AAH35865.1|  417|Homo sapiens TTC7B protein protein.        30   5.7  

>BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1
           protein.
          Length = 792

 Score =  119 bits (287), Expect = 7e-27
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
 Frame = +1

Query: 58  LPVRILLKPLKKRFAFHFTGSRQTARIDRPEWFLTQTLTWVKDHQSFVRCHVQPVAEKLE 237
           LP++++L PL+KRF +HF G+RQT  + +PEW+L Q L W+ +H  F+   +QP+ +K+ 
Sbjct: 304 LPIQVMLTPLQKRFRYHFRGNRQTNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDKVG 363

Query: 238 MRKVRAVNEFIAGLVALAAERLHTVLAMYHTQGAKGEIVDMDTAFAHAVDETLGFNRELI 417
              V A  EF  GL+ L  E+L T +           ++  D  F H VDE L F REL 
Sbjct: 364 -SLVNARLEFSRGLMMLVLEKLATDIPC---------LLYDDNLFCHLVDEVLLFERELH 413

Query: 418 TITGQ--DVNSVLSVLTKAETFVRWLAVEKKYALSKMDETLGSE 543
           ++ G      S + +L++   F RWL VE+K+AL KMD  L SE
Sbjct: 414 SVHGYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSMLSSE 457


>AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting protein
           1 protein.
          Length = 821

 Score =  119 bits (287), Expect = 7e-27
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
 Frame = +1

Query: 58  LPVRILLKPLKKRFAFHFTGSRQTARIDRPEWFLTQTLTWVKDHQSFVRCHVQPVAEKLE 237
           LP++++L PL+KRF +HF G+RQT  + +PEW+L Q L W+ +H  F+   +QP+ +K+ 
Sbjct: 333 LPIQVMLTPLQKRFRYHFRGNRQTNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDKVG 392

Query: 238 MRKVRAVNEFIAGLVALAAERLHTVLAMYHTQGAKGEIVDMDTAFAHAVDETLGFNRELI 417
              V A  EF  GL+ L  E+L T +           ++  D  F H VDE L F REL 
Sbjct: 393 -SLVNARLEFSRGLMMLVLEKLATDIPC---------LLYDDNLFCHLVDEVLLFERELH 442

Query: 418 TITGQ--DVNSVLSVLTKAETFVRWLAVEKKYALSKMDETLGSE 543
           ++ G      S + +L++   F RWL VE+K+AL KMD  L SE
Sbjct: 443 SVHGYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSMLSSE 486


>AK021847-1|BAB13910.1|  416|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11785 fis, clone HEMBA1006035. ).
          Length = 416

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +1

Query: 361 DTAFAHAVDETLGFNRELITITGQDVN--SVLSVLTKAETFVRWLAVEKKYALSKMDETL 534
           D  F H VDE L F REL ++ G      S + +L++   F RWL VE+K+AL KMD  L
Sbjct: 19  DNLFCHLVDEVLLFERELHSVHGYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSML 78

Query: 535 GSE 543
            SE
Sbjct: 79  SSE 81


>AC073073-1|AAQ96849.1|  416|Homo sapiens unknown protein.
          Length = 416

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +1

Query: 361 DTAFAHAVDETLGFNRELITITGQDVN--SVLSVLTKAETFVRWLAVEKKYALSKMDETL 534
           D  F H VDE L F REL ++ G      S + +L++   F RWL VE+K+AL KMD  L
Sbjct: 19  DNLFCHLVDEVLLFERELHSVHGYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSML 78

Query: 535 GSE 543
            SE
Sbjct: 79  SSE 81


>BC048270-1|AAH48270.2|  584|Homo sapiens TTC7B protein protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +1

Query: 247 VRAVNEFIAGLVALAAERLHTVLAMYHTQGAKGEIVDMDTAFAHAVDETLGFNRELITIT 426
           +R + E +     LA +R H++    H Q A    + +  A +  + E LG+ R+ + + 
Sbjct: 230 LRGMQEVLQRKALLAFQRAHSLSPTDH-QAAF--YLALQLAISRQIPEALGYVRQALQLQ 286

Query: 427 GQDVNS--VLSVLTKAE 471
           G D NS  +L++L  A+
Sbjct: 287 GDDANSLHLLALLLSAQ 303


>BC035865-1|AAH35865.1|  417|Homo sapiens TTC7B protein protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +1

Query: 247 VRAVNEFIAGLVALAAERLHTVLAMYHTQGAKGEIVDMDTAFAHAVDETLGFNRELITIT 426
           +R + E +     LA +R H++    H Q A    + +  A +  + E LG+ R+ + + 
Sbjct: 230 LRGMQEVLQRKALLAFQRAHSLSPTDH-QAAF--YLALQLAISRQIPEALGYVRQALQLQ 286

Query: 427 GQDVNS--VLSVLTKAE 471
           G D NS  +L++L  A+
Sbjct: 287 GDDANSLHLLALLLSAQ 303


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,841,665
Number of Sequences: 237096
Number of extensions: 2179888
Number of successful extensions: 8749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8743
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)