Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O18
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50040.1 68414.m05615 expressed protein 31 0.46
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 30 1.4
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 30 1.4
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 30 1.4
At3g57140.2 68416.m06362 patatin-related contains Patatin domain... 29 2.5
At3g57140.1 68416.m06361 patatin-related contains Patatin domain... 29 2.5
At5g45570.1 68418.m05596 Ulp1 protease family protein contains P... 29 3.3
At5g28235.1 68418.m03421 Ulp1 protease family protein contains P... 29 3.3
At2g46900.1 68415.m05857 expressed protein contains Pfam profile... 28 5.7
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 28 5.7
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 27 7.5
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 27 7.5
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 27 7.5
At2g46980.2 68415.m05869 expressed protein 27 7.5
At2g46980.1 68415.m05868 expressed protein 27 7.5
>At1g50040.1 68414.m05615 expressed protein
Length = 460
Score = 31.5 bits (68), Expect = 0.46
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 279 RRIGSGTASHSTSNVSHTRCKGGNCRHGHRFRT--RSR*NIRV*QRTDNDNRSRCEQCPF 452
R S ++S S+S S + GNC +F++ R ++ V RT++++ SRC C
Sbjct: 20 RSPSSSSSSSSSSGPSVSDVSSGNCYCKIKFKSFPRQIVSVPVLLRTESESESRC--C-- 75
Query: 453 CTH*SGNIRTVVGC 494
SGN+ TV C
Sbjct: 76 ----SGNVSTVAAC 85
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +3
Query: 282 RIGSGTASHSTSNVSHTRCKGGNCRHGHRFRTRSR*NIRV*QRTDNDNRSRCEQ 443
R G+G S S H R GG RHG R+RS N+R + R+R EQ
Sbjct: 225 RHGNGKRSSDRSE-RHDRDGGGRRRHGSPKRSRSPRNVR---EGSEERRARIEQ 274
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +3
Query: 282 RIGSGTASHSTSNVSHTRCKGGNCRHGHRFRTRSR*NIRV*QRTDNDNRSRCEQ 443
R G+G S S H R GG RHG R+RS N+R + R+R EQ
Sbjct: 225 RHGNGKRSSDRSE-RHDRDGGGRRRHGSPKRSRSPRNVR---EGSEERRARIEQ 274
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 510 CIFLLNSQPPYECFRFSEYRKDTVHILTCYRYQFSVKP*CFIDCVCESGVHVDNFPLCTL 331
C F ++ + EC F E+ ++H LT R + +K + D +C ++V+ + C +
Sbjct: 43 CDFFVHKKCGDECSEFIEHPCHSIHTLTLVRGE-RIKRGTYCD-LCGKSINVNLYYSCKI 100
Query: 330 CVIHC-*YCVK 301
C YC K
Sbjct: 101 CDFDVDLYCAK 111
>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 285 IGSGTASHSTSNVSHTRCKGGNC 353
+GSG S+ TSN+SHT G C
Sbjct: 642 VGSGRNSNRTSNLSHTYDAGSEC 664
>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
PF01734
Length = 801
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 285 IGSGTASHSTSNVSHTRCKGGNC 353
+GSG S+ TSN+SHT G C
Sbjct: 642 VGSGRNSNRTSNLSHTYDAGSEC 664
>At5g45570.1 68418.m05596 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At4g08430, At5g28235
Length = 921
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 489 QPPYECFRFSEYRKDTVH 436
QP Y CF+F EY +D V+
Sbjct: 734 QPDYRCFKFREYYEDQVN 751
>At5g28235.1 68418.m03421 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; simlar to At4g08430, At5g45570
Length = 568
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 489 QPPYECFRFSEYRKDTVH 436
QP Y CF+F EY +D V+
Sbjct: 457 QPDYRCFKFREYYEDQVN 474
>At2g46900.1 68415.m05857 expressed protein contains Pfam profile
PF04910: Protein of unknown function, DUF654
Length = 627
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 184 DHQSFVRCHVQPVAEKLEMRKVRAVNE 264
DHQS V HVQPV++ +K + N+
Sbjct: 69 DHQSSVADHVQPVSKNKSKKKKKKKNK 95
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 130 ARIDRPEWFLTQTL--TWVKD 186
+R+D P+WFL+ L TW KD
Sbjct: 196 SRVDVPQWFLSSALGETWSKD 216
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 237 NEKSQSC**IHCRSRRI-GSGTASHSTSNVSHTRCKGGNCRH 359
+ SQSC H ++ + G A ST+ + +C GG+ RH
Sbjct: 521 HNNSQSCSSEHAKTGNLCGKEDARSSTAGSTLKKCSGGSSRH 562
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 237 NEKSQSC**IHCRSRRI-GSGTASHSTSNVSHTRCKGGNCRH 359
+ SQSC H ++ + G A ST+ + +C GG+ RH
Sbjct: 521 HNNSQSCSSEHAKTGNLCGKEDARSSTAGSTLKKCSGGSSRH 562
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 237 NEKSQSC**IHCRSRRI-GSGTASHSTSNVSHTRCKGGNCRH 359
+ SQSC H ++ + G A ST+ + +C GG+ RH
Sbjct: 521 HNNSQSCSSEHAKTGNLCGKEDARSSTAGSTLKKCSGGSSRH 562
>At2g46980.2 68415.m05869 expressed protein
Length = 516
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 104 SISLDLGKRRASTDRNGSSHRL 169
S S + GKR +S+D+ GSSH L
Sbjct: 362 SESTETGKRSSSSDKKGSSHDL 383
>At2g46980.1 68415.m05868 expressed protein
Length = 516
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 104 SISLDLGKRRASTDRNGSSHRL 169
S S + GKR +S+D+ GSSH L
Sbjct: 362 SESTETGKRSSSSDKKGSSHDL 383
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,045
Number of Sequences: 28952
Number of extensions: 302112
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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