Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O17
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 86 2e-17
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 86 2e-17
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 81 6e-16
At5g60060.1 68418.m07531 F-box family protein various predicted ... 31 0.46
At5g44290.1 68418.m05421 protein kinase family protein contains ... 29 3.2
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 28 5.7
At4g14730.1 68417.m02265 transmembrane protein-related low simil... 28 5.7
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 7.5
At5g62910.1 68418.m07894 expressed protein predicted proteins, A... 27 9.9
At3g55160.1 68416.m06126 expressed protein 27 9.9
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 27 9.9
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 86.2 bits (204), Expect = 2e-17
Identities = 58/168 (34%), Positives = 79/168 (47%)
Frame = +3
Query: 93 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 272
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 273 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 452
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 453 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFKK 596
TGPF N PLRR+ Q YVIGTSTKVD+ L DD YF K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLD-KFDDKYFGK 163
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 86.2 bits (204), Expect = 2e-17
Identities = 58/168 (34%), Positives = 79/168 (47%)
Frame = +3
Query: 93 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 272
RN DL GV ++S+S+MYHK+ ++ + V +
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV------------- 58
Query: 273 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 452
+ FYP +D ++ + +K + R ++TPGTV I+LAGR GKR
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 453 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFKK 596
TGPF N PLRR+ Q YVIGTSTKVD+ L DD YF K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLD-KFDDKYFGK 163
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 81.0 bits (191), Expect = 6e-16
Identities = 56/168 (33%), Positives = 76/168 (45%)
Frame = +3
Query: 93 RNYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 272
RN DL GV ++S+S+MYHK+ ++ V + EK
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPV--EKPA------- 62
Query: 273 KSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 452
FYP +D + + + + + ++TPGTV I+LAGR GKR
Sbjct: 63 ----KFYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
Query: 453 XXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFKK 596
TGPF N PLRR+ Q YVIGTSTK+D+ DD YF K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVN-TEKFDDKYFGK 163
>At5g60060.1 68418.m07531 F-box family protein various predicted
proteins, Arabidopsis thaliana ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 374
Score = 31.5 bits (68), Expect = 0.46
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 103 TSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 282
+S+T++ + ++ C T RL + LS + R K P+ P W S + L QS
Sbjct: 30 SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87
Query: 283 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 387
PL R+ +V + + + DL S C
Sbjct: 88 KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 499 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 395
RR H K PVK++ P +T L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 429 ARHACQRVCPPTECTLCRE 373
ARHAC+R C EC C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429
>At4g14730.1 68417.m02265 transmembrane protein-related low
similarity to transmembrane protein OTMP [Ovis aries]
GI:9965379
Length = 235
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 242 FTAYLLNHDGWFLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFLLLDT 63
F A HD FLG F F LL + L + HP + S + F +++ DT
Sbjct: 140 FWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIFSGIASIVFCGYIIFDT 199
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 363 VSSYAHVY*NSCHENDP*SCPEWGRMI 283
+ +A V +SC+END SC W +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371
>At5g62910.1 68418.m07894 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 327
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 364 LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 510
L +L Q +F +SV+ C +CY LDL S +PC GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +1
Query: 379 AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 489
AQC FCW AD ++ + + + C +C +SSL L R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 61 AVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTR--KLKSPRNQPSWLS 228
AV R++ +RG ++S++ +A C T L ++L + R KL P +Q ++ S
Sbjct: 258 AVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTS 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,709
Number of Sequences: 28952
Number of extensions: 276174
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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