Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O16
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 105 4e-24
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 75 1e-14
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 67 2e-12
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 58 1e-09
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 54 2e-08
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 30 0.22
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 3.6
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 6.3
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 8.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 8.4
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 105 bits (253), Expect = 4e-24
Identities = 62/184 (33%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Frame = +3
Query: 60 VNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQ----GEFPALKDRPFPLGHESSGIIHE 227
+ + P +T D V V ++ +G+CG+D+H + G+F + +P LGHES+G++ E
Sbjct: 18 IEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDF--ILKKPMILGHESAGVVVE 75
Query: 228 VGTA-SIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVP 404
VG S K G VAV+P C LC++CRSG Y C +T DG Y
Sbjct: 76 VGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPY--DGTLRTYYITT 133
Query: 405 QDQVYALPDGITTEQAGLCEPYSCVSHGFKRASPLSVGKKILIVGAGIIGNLWVTTLHHH 584
+D LP I+ E+ L EP S H R + L G ++L++G G +G L + +
Sbjct: 134 EDFCTKLPKQISVEEGALFEPMSVAVHAMTRGN-LKCGSRVLVMGCGTVGLLMMAVAKAY 192
Query: 585 GHRD 596
G D
Sbjct: 193 GAID 196
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 74.5 bits (175), Expect = 1e-14
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Frame = +3
Query: 99 DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGT-ASIFKKGQKVAVD 275
+V+V ++Y+GVC TDLH +QG++P P GHE +G++ +VG + K G +V V
Sbjct: 35 EVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVK 94
Query: 276 -PNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTEQA 452
N +C CE+C C ++ G DG + Y +P+ + E A
Sbjct: 95 WMNSSCGNCEYCMKAEETICPHIQLS---GYTVDGTFQHYCIANATHATIIPESVPLEVA 151
Query: 453 G--LCEPYSCVSHGFKRASPLSVGKKILIVGAG 545
+C +C + + S + G+ I I GAG
Sbjct: 152 APIMCAGITC--YRALKESKVGPGEWICIPGAG 182
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 67.3 bits (157), Expect = 2e-12
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 15 MEAVLFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVC-GTDLHIIQGEFPALKDRPF 191
M+A ++DG + + P P IT DVIVK +C G+D HI GE P ++
Sbjct: 37 MKACVWDGPLNVK--IAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
Query: 192 PLGHESSGIIHEVGT-ASIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLT 338
LGHES GI+ E G + + G +V + + AC C FC+ Y C T
Sbjct: 95 -LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDT 143
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 90 KDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGTASI-FKKGQKV 266
K +V VKV++S VC TD + + G P P LGHE +GI+ +G I + G V
Sbjct: 33 KAHEVRVKVDWSAVCHTDAYTLSGVDPE-GAFPIVLGHEGAGIVESIGEGVINVRPGDHV 91
Query: 267 AVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDG 377
+ C C+FCRSG C G+ DG
Sbjct: 92 ILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDG 128
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 99 DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG-TASIFKKGQKVAVD 275
+V +K+ SGVC TD + + G+ P P LGHE +GI+ VG + + G V
Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGKDPE-GLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
Query: 276 PNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDG 377
C C+FC+SG C G+ DG
Sbjct: 98 YTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDG 131
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 351 STIGIWKDGGWAQYVCVPQDQVYALPDGIT-TEQAGLCEPYSCVSHGFKRASPLSVGKKI 527
S + KDG A+Y +P+ +P ++ TE A + P++ R +
Sbjct: 94 SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAYLALSRGETKG-SDIV 152
Query: 528 LIVGA-GIIGN 557
L+VGA G +G+
Sbjct: 153 LVVGALGAVGS 163
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 49 PLNTSTIILYPRLQKTRMS*SKWNTL 126
PL + I+LY R Q TRM ++WN L
Sbjct: 386 PLCCAKILLYARRQLTRM--ARWNNL 409
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 231 GTASIFKKGQKVA----VDPNRACNLCEFCRSGNYQYCLTAGINSTIGIW 368
GT ++ G VA +R N + +G+ Y +TAG ++ I +W
Sbjct: 164 GTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVW 213
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 306 CRSGNYQYCLTAGINSTIGIWK 371
C S + + CLTAG S + +W+
Sbjct: 222 CVSPDAKRCLTAGTGSDVKVWE 243
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 189 FPLGHESSGIIHEVGTASIFKKGQKVAVDPNRACNLC 299
F +G ++S + HE+ T + + + + ++PN +C C
Sbjct: 805 FEIG-QASEVAHEIQTNAENMRNRYIVLEPNESCWHC 840
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,640
Number of Sequences: 5004
Number of extensions: 51919
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -