Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O16
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)             176   1e-44
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   1e-34
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            91   8e-19
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     48   8e-06
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            42   4e-04
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            31   0.71 
SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)                  31   0.93 
SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)                     31   0.93 
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   29   2.9  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           27   8.7  

>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score =  176 bits (428), Expect = 1e-44
 Identities = 81/190 (42%), Positives = 115/190 (60%), Gaps = 1/190 (0%)
 Frame = +3

Query: 27  LFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHE 206
           L+DG+ S +      P+P ++  ++VIVKV YSG+C  DL I++GE PA K     LGHE
Sbjct: 55  LWDGQLSVI----TRPVPHVSNPSEVIVKVAYSGICDRDLQILEGELPAAKC--VVLGHE 108

Query: 207 SSGIIHEVGT-ASIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGW 383
            SG++ +VG+       G +V V+PN +CN C+ CR G   +C   G  S IG+WK+GGW
Sbjct: 109 FSGVVSDVGSDVKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNGGW 168

Query: 384 AQYVCVPQDQVYALPDGITTEQAGLCEPYSCVSHGFKRASPLSVGKKILIVGAGIIGNLW 563
            QY  V    ++ +P  ++ +QA LCEP SCV HG  +  P +   KIL+ G G+ G LW
Sbjct: 169 TQYARVHAPNIHIVPPQVSLKQAALCEPISCVLHGLDKLHPAARDSKILVSGTGVTGLLW 228

Query: 564 VTTLHHHGHR 593
           +  LH HG+R
Sbjct: 229 MCILHFHGYR 238


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score =  142 bits (345), Expect = 1e-34
 Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
 Frame = +3

Query: 72  PLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGT-ASIF 248
           P P +    DV+VK+ YS V GTDLH+++G     K     LGH+  GI+ E+G      
Sbjct: 18  PTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIGADVQHV 75

Query: 249 KKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALP 428
             G +V ++P  +C +C+FC  G    C   G N+ IGI ++GGWAQ+  +    V  LP
Sbjct: 76  SVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNGGWAQFCRLSAKNVIPLP 135

Query: 429 DGITTEQAGLCEPYSCVSHGFKRASPLSVGKKILIVGAGIIGNLWVTTLHHHGHRD 596
             +T EQA   EP SC+  G+    PL    ++LI GAG  G LW + LH  G+R+
Sbjct: 136 HQVTFEQALFSEPMSCILRGWDLLVPLQTDAEVLICGAGNSGLLWASFLHFRGYRE 191


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
 Frame = +3

Query: 102 VIVKVEYSGVCGTDLHIIQ----GEFPALKDRPFPLGHESSGIIHEVGTA-SIFKKGQKV 266
           V + +   G+CG+D+H  +    G+F  +   P  LGHESSG+I  VG   S  K+G +V
Sbjct: 22  VQISMHTVGICGSDVHYWKHGCIGDF--VLTAPMVLGHESSGVICAVGEGVSDLKEGDRV 79

Query: 267 AVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTE 446
           A++P   C  C +C+ G Y  C  A +N        G   +      D  Y LPD ++ E
Sbjct: 80  AIEPGTPCRTCSYCKKGRYNLC--AKMNFCATPPYHGSLCRRYNHQADFCYKLPDHVSLE 137

Query: 447 QAGLCEPYSCVSHGFKRASPLSVGKKILIVGAGIIGNLWVTT 572
           +  L EP S   H   RA  +++G  +L+ GAG IG + + T
Sbjct: 138 EGALLEPLSVGVHACNRAG-ITIGSNVLVCGAGPIGLVTLLT 178


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = +3

Query: 15  MEAVLFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFP 194
           M+AVLF        Y+ + P PK+ K+T+V+++V ++ +   D    +G +P        
Sbjct: 28  MKAVLFTPGGPESMYIGDAPRPKL-KETEVLIRVHFTALNRADTLQRKGSYPPPPGESEI 86

Query: 195 LGHESSGIIHEVGTASI--FKKGQKV 266
           LG E SGI+ E+G+A    ++KG KV
Sbjct: 87  LGLEVSGIVEELGSACNLGWRKGDKV 112


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 15  MEAVLFDGKTSTLKY-VNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPF 191
           M +V+  G     K  V  Y  PK  +   V+VKV   GV   DL   QG FP     P+
Sbjct: 39  MRSVVLTGHGGNNKIKVEKYARPKPMQG-QVVVKVHACGVTFADLLQRQGHFPLAPKPPY 97

Query: 192 PLGHESSGIIHEVG 233
             G E SG++ E+G
Sbjct: 98  VCGFECSGVVEELG 111



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 375 GGWAQYVCVPQDQVYALPDGITTEQ-AGLCEPYSCVSHGFKRASPLSVGKKILI-VGAGI 548
           G W +Y CV     Y +P+ +T E+ A +   Y            L + K +L+ + AG 
Sbjct: 130 GMWTEYACVDAKMCYVMPEAMTFEEGAAIPITYLTAHLILFHLGNLGLRKSVLVHMAAGG 189

Query: 549 IG 554
           +G
Sbjct: 190 VG 191


>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 90  KDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFP--LGHESSGIIHEVG 233
           K  +V +K+  +GVC TD + + G  P   +  FP  LGHE  GI+  VG
Sbjct: 27  KAHEVRIKILATGVCHTDAYTLSGVDP---EGLFPCILGHEGGGIVESVG 73


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 102 VIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG 233
           V++K+  + V   + +I  G +  L + PF  G+  +GIIH +G
Sbjct: 290 VLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIG 333


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 99  DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG 233
           +V+VK  Y+G+  TD++   G +      PF  G E  G +   G
Sbjct: 40  EVLVKTRYAGINATDINHTAGRYKPWNKPPFDAGLEGLGEVVATG 84


>SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)
          Length = 490

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 330 CLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTEQAGLCEPY 470
           C+ AGI   I   ++GG+ +Y+ +P + + A+      E+     PY
Sbjct: 289 CIVAGIQEVISDGREGGYGRYLMLPLEIIPAVKQPALPERHEAWAPY 335


>SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)
          Length = 289

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 375 GGWAQYVCVPQDQVYALPDGITTEQAGLCEPYSCVSH 485
           G W +Y  + +DQV  +PD I+ E A       C ++
Sbjct: 137 GSWTRYHVLSEDQVIKVPDYISVEMAATLSVNPCTAY 173


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 417  YALPDGITTEQAGLCEPYSCVSHGFKRASPLSVGKKILIVGAGI 548
            YALPDG  +++A +  P   +S+G+  A  L+V   + +V + I
Sbjct: 1041 YALPDGTVSDRATMEIPAGALSYGYYHAC-LNVSLNLWLVDSAI 1083


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 86  YKRHGCHSQSGILWSL 133
           Y+R+GC+SQS   WSL
Sbjct: 101 YRRNGCYSQSTKTWSL 116


>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 269 GNFLALFKDRCGAHFVNYTAGFMTQRKGTILQCWE 165
           G++++LF     A+F+  + GF   RKG + + +E
Sbjct: 56  GSYISLFVSMPFAYFITESEGFAGSRKGIMARVYE 90


>SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 252 KGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCV 401
           KGQ    D +  C++  +C SG+Y  C +A + + + +W++     + CV
Sbjct: 90  KGQDYPFDHH--CDV--YCCSGDY--CNSASLPALVFVWREANQRSFTCV 133


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 288  CNLCEFCRSGNYQYCLTA 341
            CN C FC+   + Y LTA
Sbjct: 1899 CNACGFCKYAKFDYTLTA 1916


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 509 KRGCSFEPVRHARIRFAESSLFSSDSIGQCVDL 411
           KR  S  PVR    +  E S  S DS G+CVD+
Sbjct: 231 KRARSHLPVRELEQKAEEMSKASRDSGGKCVDV 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,474
Number of Sequences: 59808
Number of extensions: 387833
Number of successful extensions: 1134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)