Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O15
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...   104   9e-24
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.69 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.69 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   4.8  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.5  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   8.5  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score =  104 bits (250), Expect = 9e-24
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = +3

Query: 360 KPRYSS*WAVRRSGKSSIQKVVFHKMSPNETLFLESTNKIVQDDIYNSSFVQFQIWDFPG 539
           KPR      +RRSGKSSIQKVVF+KM PNETLFLEST+K+ QD I  SSF+ F +WDFPG
Sbjct: 2   KPRKIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPG 59

Query: 540 QIDFFDPTFDSDTMFGGCGA 599
           Q+D FD  FD +++F   GA
Sbjct: 60  QVDVFDAAFDFESIFTQVGA 79


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 543 FVQESPIFEIVQNYYCRYHLVLFCLWILKTVFHLVTS 433
           ++Q  PI +  ++Y C +     C W LK +F LV S
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWSLKDMFVLVAS 502


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 396 SGKSSIQKVVFHKMSPNETLFLESTNKIVQDDIYNSSFVQFQIWDFPGQIDFFD 557
           SGKSS++ +VF      +T  L +T  I    +     +   +WD  GQ  F +
Sbjct: 13  SGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEAFME 66


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 351 KTNKPRYSS*WAVRRSGKSSIQKVVFHKMSPNETLFLESTNKIVQDD 491
           K  KP Y++     RSG SSI      + SP  ++ ++   K  +DD
Sbjct: 347 KKQKPVYTNKKKSNRSGTSSISSSGILESSPATSISVDEPQKDSKDD 393


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 402 KSSIQKVVF--HKMSPNETLFLESTNKIVQDDIYNSSFVQFQIWDFP 536
           K+ +Q+++F  HK+   +  FL   + IV++D YN+S     I D P
Sbjct: 259 KALMQRLLFFRHKL---QKAFLSPDHLIVEEDFYNASKYLNAISDIP 302


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 557 IEEVYLSRKVPYLKLYKTTIVDIILYY 477
           ++ ++L ++  ++ L  TTIVDIIL +
Sbjct: 314 VKHLFLMQRPSFVSLNYTTIVDIILLH 340


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 459 LESTNKIVQDDIYNSSFVQFQIWDFPGQI 545
           +E+   IVQ    N  FV  Q W+ PG++
Sbjct: 90  VEAWKPIVQAIHDNDCFVFIQFWNLPGEL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,922
Number of Sequences: 5004
Number of extensions: 40538
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)