Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O15
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187     28   5.0  
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173...    28   5.0  

>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
          Length = 817

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 QDDPNCYVGSFPKNFSYGPCEQNGDRD 333
           +D P+C++G  P N S G C+     D
Sbjct: 644 EDVPDCHLGEKPVNLSSGQCQNANTED 670


>02_04_0001 -
           18816492-18816741,18816881-18817050,18817244-18817388,
           18817495-18817565,18817910-18817993,18818103-18818222,
           18818310-18818480,18818955-18819044,18821893-18821985,
           18822073-18822405
          Length = 508

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +1

Query: 283 FPKNFSYGPCEQNGDRDNTSLQERPTNLAILLNGRLDGLASHQYKKWSFIRCHQMKHCF* 462
           F ++F +   EQ  DR +T  ++R  +    L  R + L   Q+      RC +M HCF 
Sbjct: 220 FYRSFMFSYLEQVADRVDTREEDRLLDAVRKLATRAEHL---QWASEFSRRCEEMHHCF- 275

Query: 463 NPQTK*YKMISTIVVLYNFKY 525
                 ++    + + YN+K+
Sbjct: 276 -TIVARHRSQHLVDISYNYKF 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,745
Number of Sequences: 37544
Number of extensions: 221683
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)