Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O15
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   9e-09
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.2  
SB_25517| Best HMM Match : RVT_1 (HMM E-Value=0.00026)                 29   2.9  
SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  27   8.8  
SB_253| Best HMM Match : GRP (HMM E-Value=0.61)                        27   8.8  

>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 519 QIWDFPGQIDFFDPTFDSDTMFGGCGA 599
           +IWDFPGQIDFFDP FDS+ +FG CGA
Sbjct: 96  EIWDFPGQIDFFDPAFDSEVIFGNCGA 122


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +3

Query: 423 VFHKMSPNETLFLES-TNKI------VQDDIYNSSFVQFQIWDFPGQIDFF 554
           + H++  + T F+ S TN I      ++ D  +  F+ F+IWDF GQ D++
Sbjct: 567 LMHRLMLDNTYFINSATNGISMEEFRLKKDFLHREFI-FKIWDFGGQEDYY 616


>SB_25517| Best HMM Match : RVT_1 (HMM E-Value=0.00026)
          Length = 216

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 241 MMSYQDDPNCYVGSFPKNFSYGPCEQNGDRDNTSLQERPTNLAILLN 381
           + S  + PN   G     F YG  E+  DR+ T L ER     I+ N
Sbjct: 118 LYSALEGPNGVTGIADDIFVYGSTEKEHDRNLTDLMERAKEKGIVFN 164


>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 268  CYVGSFPKNFSYGPCEQNGDRDNTSLQERPTNLAILLNGRLD 393
            C    + K  S GP  +  D D T+   +P  + +L+ G  D
Sbjct: 986  CKTLRYAKKHSQGPFSRQPDEDMTNTPTQPEKMEVLVGGYQD 1027


>SB_253| Best HMM Match : GRP (HMM E-Value=0.61)
          Length = 356

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 501 SSFVQFQIWDFPGQIDFFDPTFDSDTMFGGCG 596
           S F + Q W+F  Q+D+    FD DT + G G
Sbjct: 68  SHFFRNQQWNFTHQLDYGIRYFDIDTCYVGKG 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,488
Number of Sequences: 59808
Number of extensions: 283894
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)