Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O15
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical pr...    76   2e-14
AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical ...    76   2e-14
L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +3

Query: 390 RRSGKSSIQKVVFHKMSPNETLFLESTNKIVQDDIYNSSFVQFQIWDFPGQIDFFDPTFD 569
           +RSGK+SI+KVVF KMSPNET+F+EST +I +D I  SSF+ F+  +FPGQ+  FD + D
Sbjct: 35  KRSGKTSIRKVVFQKMSPNETMFVESTARITRDTIC-SSFINFETIEFPGQMCPFDDSLD 93

Query: 570 SDTMFGGCGA 599
              +F  C A
Sbjct: 94  PVGVFQKCEA 103


>AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +3

Query: 390 RRSGKSSIQKVVFHKMSPNETLFLESTNKIVQDDIYNSSFVQFQIWDFPGQIDFFDPTFD 569
           +RSGK+SI+KVVF KMSPNET+F+EST +I +D I  SSF+ F+  +FPGQ+  FD + D
Sbjct: 35  KRSGKTSIRKVVFQKMSPNETMFVESTARITRDTIC-SSFINFETIEFPGQMCPFDDSLD 93

Query: 570 SDTMFGGCGA 599
              +F  C A
Sbjct: 94  PVGVFQKCEA 103


>L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical
           protein R05D3.9 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 396 SGKSSIQKVVFHKMSPNETLFLE 464
           SGK S QK+   K  PNE + LE
Sbjct: 212 SGKRSHQKISMEKFGPNELILLE 234


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 549 SLFVQESPIFEIVQNYYCRYHLVLFCLWILKTVFHLVTS--YER 424
           SL++   P+F  V++YY    LV F   I  T+  ++ S  YE+
Sbjct: 287 SLYLIHWPVFVYVKHYYGEQFLVYFLAIIFSTLLAIIMSETYEK 330


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 272 TWVHFPKILATGRVNKTVIE--ITHL 343
           TW+HFP IL  G     V E  ITHL
Sbjct: 417 TWIHFPPILPNGLEKYEVNENVITHL 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,694
Number of Sequences: 27780
Number of extensions: 223215
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)