Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O15
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alp...    29   3.1  
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    28   5.4  

>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 alpha subunit GB:AAB86803 GI:2454182 from
           [Arabidopsis thaliana]; identical to cDNA pyruvate
           dehydrogenase E1 alpha subunit mRNA, nuclear gene
           encoding plastid protein GI:2454181
          Length = 428

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 342 STRKTNKPRYSS*WAVRRSGKSSIQKVVFHKMSPNETLFL---ESTNKIVQDDIYNSSF 509
           STR  +  R +   A RRS   S+Q+VV  K S N T  L   E   ++ +D I   SF
Sbjct: 39  STRSLSLRRLNHSNATRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSF 97


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 336 HISTRKTNKPRYSS*WAVRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIVQDDIYNSSF 509
           H+  +++N+      W +   GK+SI K ++ ++SP      F+E+   + +D+ ++   
Sbjct: 196 HLLDQESNEVLLVGIWGMGGIGKTSIVKCLYDQLSPKFPAHCFIENIKSVSKDNGHDLKH 255

Query: 510 VQFQI 524
           +Q ++
Sbjct: 256 LQKEL 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,992
Number of Sequences: 28952
Number of extensions: 197180
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)