Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O14
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    31   0.10 
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    29   0.31 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    25   5.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.1  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   6.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   6.7  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 234 HRKPFDKHTFMPSALDFYQTATSRPVHSISYITG 335
           H K   KH  +PS LD+      RP H + ++ G
Sbjct: 250 HNKLVKKHKPLPSTLDYTAYVKKRPTHRLKFLIG 283


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 515 TSLNLSFAQEYTVSGIKLAIVKECDYFLNDNIIEFNRRRNE 393
           + LN  F+ E+ +     +  KE + FLND  +EF +RR E
Sbjct: 6   SELNEEFSNEFNIPPPTESSSKEGNRFLNDFRVEFEKRRIE 46


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 281  LLPNRDFETRAFYQLYHRIVGYINAFKHYLKPYPQEKL 394
            LLP  DF+ R   ++  R+VG I+    YL+ Y  E L
Sbjct: 1599 LLP--DFDARMLLEIISRLVGTISDETSYLRDYSVEIL 1634


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 23/91 (25%), Positives = 37/91 (40%)
 Frame = +3

Query: 243 PFDKHTFMPSALDFYQTATSRPVHSISYITGLWVTLTHSSIT*SLILKRNFISSAIKLND 422
           P + +++      +   ATS+   S S+ +      T SS   S +L  + +SSAI  + 
Sbjct: 93  PSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSS 152

Query: 423 VVVEKVVTFFDYSQFDATHSVFLSKREIETS 515
             VE  ++    S  D   S   S     TS
Sbjct: 153 TSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 153 PICMKKKLQEDYQRIL*NCRSPCARCSHRKPFDKHTFM 266
           P+ + ++  +++ ++L NCR+     +  K FD+H+ M
Sbjct: 29  PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 156 ICMKKKLQEDYQRIL*NCRSPCARCSHRKPFD-KHTFMPSALD 281
           +C +KK++ D  R   NC++    C++  P   K +F P  ++
Sbjct: 33  MCRRKKIKCDGLRPCKNCKAGKLECTYHMPSSRKSSFSPEYVE 75


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 330 TGLWVTLTHSSIT*SLILKRNFISSAIKLNDVVVEKVVTFFDY 458
           TG+WVT         + L+RN  S  + LN   V   + +F+Y
Sbjct: 139 TGVWVTENDKIAAIGIHLRRNITSHGLALN---VSTDLKYFNY 178


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 512 SLNLSFAQEYTVSGIKLAIVKECDYFLNDNIIEFNRRRNEVSLE 381
           ++NLSF  E TVS  K+ I    D  LN ++I F     E  L+
Sbjct: 550 TVNLSFVNETTVSVDKVVICIPMDK-LNTHLITFEPPLEEKKLK 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,335
Number of Sequences: 5004
Number of extensions: 30394
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)