Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O14
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    27   6.9  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         27   9.2  

>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 497 FAQEYTVSGIKLAIVKECDYFLNDNIIEFNRRRNEVSLED 378
           F   Y V+G+K    + C Y      I F RR+N+   +D
Sbjct: 110 FCMGYYVNGLKAVAKRVCSYCRKYGCIVFERRKNQSETDD 149


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 235 TVNHSTSTPSCPVRLTFTKPRLRDPCILSAISQDCGLH*RIQALPEALSSRE 390
           T +HST       R T   P LR+P +     +D  LH R +  P   S+++
Sbjct: 251 TTSHSTVEVPVRPRSTSLPPGLRNPAVYLKPGRDHNLHIRARQTPYPKSTQQ 302


>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 KKLQEDYQRIL*NCRSPCARCSHRKPFDKHTFMP 269
           +K++E   R   N R+ C+R    KPFDK   +P
Sbjct: 136 RKIREQRSR---NSRTLCSRTDRDKPFDKRELVP 166


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 129 SETIGKRTPICMKKKLQEDYQRIL*NCRSPCARCSHRKPFDK 254
           S T G RT   +K+   EDY+  L N  +PC + SH + F K
Sbjct: 212 SFTDGHRTAN-LKELTSEDYKLFL-NRETPCEKASHMEEFVK 251


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 354 HSSIT*SLILKRNFISSAIKLNDVVVEKVVTFFDYSQFDATHSV 485
           HS  T   +LK   + +  K++D VVE V  F + +QF AT  V
Sbjct: 169 HSLFTLPRVLK--VLHAQGKVDDAVVESVREFLEANQFKATSDV 210


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 344  NPQSCDIADRMHGSRSRGLVKVKRTGHEGVLVEWFTVAAPSTWR 213
            NP+   +   M GSR+  +V  +R+G   VL        P  W+
Sbjct: 1357 NPKGRGVKFAMRGSRTLTVVFTRRSGRRNVLAVTTRAIRPRKWQ 1400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,835,868
Number of Sequences: 59808
Number of extensions: 233006
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)