Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O14
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59070.1 68416.m06585 auxin-responsive protein, putative simi...    27   5.7  
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain...    27   7.5  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    27   7.5  
At3g25290.1 68416.m03158 auxin-responsive family protein similar...    27   7.5  
At1g48460.1 68414.m05417 expressed protein                             27   7.5  

>At3g59070.1 68416.m06585 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 (GI:11357190)
           [Arabidopsis thaliana]
          Length = 466

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 PNRDFETRAFYQLYHRIVGYI 349
           PN+D + R ++  YH  +GYI
Sbjct: 311 PNKDHKYRKYWNWYHHTMGYI 331


>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related low similarity to clathrin assembly
           protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
           profile PF01417: ENTH domain
          Length = 591

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 372 SLILKRNFISSAIKLNDVVVEKVVTFFDYSQFDATHSVFLSKR 500
           +L+LK +F      +ND ++  V  FF+ S+ DA  ++ + KR
Sbjct: 221 ALVLKESF-KIYCAINDGIINLVDMFFEMSRHDAVKALNIYKR 262


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 372 SLILKRNFISSAIKLNDVVVEKVVTFFDYSQFDATHSVFLSKR 500
           +L+LK +F      +ND ++  V  FF+ S+ DA  ++ + KR
Sbjct: 229 ALVLKESF-KIYCAINDGIINLVDMFFEMSRHDAVKALNIYKR 270


>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 393

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = +2

Query: 281 LLPNRDFETRAFYQLYHRIVGY-------INAFK--HYLKPYPQEKLHFV 403
           L P +D + R ++ +YH  VGY       IN FK  + LKP    K  ++
Sbjct: 309 LRPKKDHKYRFYWNIYHHGVGYAILTLGIINVFKGLNILKPQDTYKTAYI 358


>At1g48460.1 68414.m05417 expressed protein
          Length = 340

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 336 LWVTLTHSSIT*SLILKRNFISSAIKL---NDVVVEKVVTFFDYSQFDATHSVFLS 494
           LWV      I+ SLIL + F+S  I+    ND V E V +F   + F A  ++FLS
Sbjct: 121 LWVLAPVVLIS-SLILPQFFLSGIIEATFKNDTVAEIVTSFCFETVFYAGLAIFLS 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,165,823
Number of Sequences: 28952
Number of extensions: 155606
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)