Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O12
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    64   5e-12
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    23   6.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    23   6.3  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    23   8.3  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    23   8.3  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 63.7 bits (148), Expect = 5e-12
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
 Frame = +2

Query: 119 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTS 283
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTS
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTS 60


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 FLEKSKDLVRASTVSMYMSLVTI 266
           FLE  + L+  S+V  Y+S +T+
Sbjct: 614 FLENHRSLIGLSSVKEYLSKITL 636


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  ITKILGINSETRYYIEFLNSHISSTACLLKLYAFF 137
           ++K +   +   +Y++F++     T+C+  ++ FF
Sbjct: 1   MSKTVNFRATKNFYLQFVSVSSRDTSCIPCIHLFF 35


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 188 PVVVSGEVKGLSKG 229
           PVV +G+VK L KG
Sbjct: 204 PVVANGDVKSLRKG 217


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 168 SKKTVPLTSP*RTHTALA 115
           S + +P TSP ++HT+LA
Sbjct: 207 SFQKIPFTSPNQSHTSLA 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,181
Number of Sequences: 5004
Number of extensions: 17810
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)