Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O12
(283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 62 5e-11
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 61 1e-10
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 58 8e-10
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 55 1e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 40 4e-04
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 37 0.003
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602... 26 5.2
12_02_0658 + 21608474-21609401,21609996-21610012 25 6.8
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 25 6.8
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 25 6.8
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 25 6.8
07_03_1280 + 25434933-25436153 25 9.0
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395... 25 9.0
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 62.5 bits (145), Expect = 5e-11
Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +2
Query: 119 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDG-PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMS 58
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 60.9 bits (141), Expect = 1e-10
Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +2
Query: 119 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
KAV VL G V G V Q D+ P V+ V GL+ G HGFH+HEFGD TNGC S
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCIS 108
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 58.4 bits (135), Expect = 8e-10
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 119 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S
Sbjct: 121 KAVVVLGSSEIVKGTIHFVQEGDG-PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMS 176
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/46 (50%), Positives = 28/46 (60%)
Frame = +2
Query: 146 VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
V+G + F Q + V G V GL+ G HGFH+H FGD TNGC S
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNS 68
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +2
Query: 182 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGC 277
SS + V V GL HGFHVH G TNGC
Sbjct: 34 SSLITVKENVSGLKPVLHGFHVHALGGTTNGC 65
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 194 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
+V GLS GKHG+ ++EFGD T G S
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAES 220
>12_02_0161 +
14659338-14659467,14659553-14659888,14660034-14660266,
14660344-14660805,14660887-14661719,14661802-14661972,
14662052-14662352
Length = 821
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 173 KDESSPVVVSGEVKGLSKGKHG 238
KD+SSP +V G+ + KGK G
Sbjct: 531 KDDSSPPLVKGQKRERGKGKVG 552
>12_02_0658 + 21608474-21609401,21609996-21610012
Length = 314
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 225 RASTVSMYMSLVTIP 269
R ST+S YMSLVT P
Sbjct: 295 RPSTISKYMSLVTSP 309
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 51 INSETRYYIEFLNSHISSTACLLKLYAFFTEM*VEQFSSTKRMKAHQ*LFLEKSKDL 221
++SE Y FLNS ISS Y TE+ V+ S+ H L K++ L
Sbjct: 286 LSSEDEIYEYFLNSEISSYLFASLKYVSLTEVKVKDNSNQMCFMKH---LLSKARSL 339
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 66 RYYIEFLNSHISSTACLLKLYAFFTEM*VEQFSSTKRMKAHQ*LFLE 206
+YYI + + + S A +YAF + EQF S++ + Q LF +
Sbjct: 408 KYYIYYSDENRSIGAIFNNIYAFCGLISGEQFYSSESLDDSQKLFAD 454
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -1
Query: 280 GATVGIVTKLMYMETVLALTKSFDFSRNNYW*AFILLVEENCSTHISVKNAYSFSR 113
GATVGIV Y + A+ K D N + + V E+ S S + S SR
Sbjct: 280 GATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVRESVSRSPSPVDERSISR 335
>07_03_1280 + 25434933-25436153
Length = 406
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 92 SHIFYGMPAKAVCVLHGD 145
SH F+G A CV HGD
Sbjct: 335 SHAFHGKKADVNCVGHGD 352
>05_05_0353 -
24338717-24338946,24339046-24339134,24339421-24339500,
24339768-24339902,24340231-24340461,24340540-24340634,
24340734-24340819,24341467-24341570,24341674-24341805,
24341883-24341999,24342170-24342229,24342779-24342820,
24342878-24342952,24343127-24343177,24343256-24343436,
24343548-24343594,24343710-24343775
Length = 606
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 194 VVSGEVKGLSKGKHGFHVHEFGDNT 268
+V + K + +H FH+H+ G T
Sbjct: 19 IVGPDPKAVKMRRHAFHLHQSGSTT 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,718
Number of Sequences: 37544
Number of extensions: 104229
Number of successful extensions: 250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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