Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O12
         (283 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                54   1e-08
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           27   2.3  
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)                    26   5.4  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         25   9.4  
SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         25   9.4  
SB_10477| Best HMM Match : DUF602 (HMM E-Value=1)                      25   9.4  
SB_4140| Best HMM Match : ANF_receptor (HMM E-Value=0.013)             25   9.4  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +2

Query: 179 ESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
           E  P  ++G ++GL  G HGFH+H +GDNTNGC S
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVS 58


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 164  FDQKDESSPVVVSGEVKGLSKGK 232
            +D +D  + + ++GE+KG+++GK
Sbjct: 5974 YDSRDRFAKIYINGELKGVTRGK 5996


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 278 CNRWYCHQTHVHG 240
           C++W+CHQ   HG
Sbjct: 725 CHQWFCHQWFCHG 737


>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 67  VTT*NFLTVTYLLRHAXXXXXXXXXXXEWNSFLRPKG*KLTSSCFWRSQR 216
           VT   F T+ +L RH             + +F+RP   +L +S F RS++
Sbjct: 331 VTAKGFRTLGFLRRHCLDTFSENHKRTLYLTFVRPHFLELKASVFKRSEK 380


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHG--FHVHEFGDNTN 271
           DVSG+V  +Q    S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
          Length = 978

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 155 TVFFDQKDESSPVVVSGEVKGL 220
           TV +   DES   V++G+VKGL
Sbjct: 466 TVGYSTMDESYKAVINGQVKGL 487


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  LGINSETRYYIEFLNSHIS 101
           LG+ SE R  IE L SH+S
Sbjct: 95  LGVVSEQRQKIELLESHVS 113


>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +2

Query: 131 VLHGDVSGTVFFDQKDESSPVVV------SGEVKGLSKGKHGFHVHEFGDNTNGCT 280
           +LH +V GT+  D  D+    VV      +G  K  S GK+G    +   +  GC+
Sbjct: 476 ILHNNVWGTICDDNWDDMDATVVCRMLGFAGPSKAASGGKYGPGTGQIWLDEVGCS 531


>SB_10477| Best HMM Match : DUF602 (HMM E-Value=1)
          Length = 429

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 119 KAVCVLHGDVSGTVFFDQKDESSPVVVSG 205
           K VC  +  +  T F D+    +PVV+ G
Sbjct: 38  KYVCTQYNGIKDTAFTDENLTLTPVVIQG 66


>SB_4140| Best HMM Match : ANF_receptor (HMM E-Value=0.013)
          Length = 472

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 KLYAFFTEM*VEQFSSTKRMKAHQ*LFLE-KSKDLVRA 230
           +L+ FF E  +E    TKR++A + LF   K+ +L  A
Sbjct: 101 RLHGFFCERHIELSERTKRLRAARVLFFRYKNTELTPA 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,843,800
Number of Sequences: 59808
Number of extensions: 123910
Number of successful extensions: 278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)