Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O12
(283 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 76 5e-15
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 76 5e-15
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 76 5e-15
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 76 5e-15
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 69 5e-13
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 54 2e-08
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 54 2e-08
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 54 2e-08
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 34 0.014
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 34 0.014
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 3.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 3.6
U29488-5|AAL27236.1| 417|Caenorhabditis elegans Hypothetical pr... 25 6.3
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 25 8.4
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 25 8.4
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 75.8 bits (178), Expect = 5e-15
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC S
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 75.8 bits (178), Expect = 5e-15
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC S
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 75.8 bits (178), Expect = 5e-15
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC S
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 59
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 75.8 bits (178), Expect = 5e-15
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +2
Query: 110 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC S
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCIS 81
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 68.9 bits (161), Expect = 5e-13
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +2
Query: 119 KAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
+AV VL G V GTV+ QK E GE+KGLS G HGFH+H++GD+T+GCTS
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTS 79
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +2
Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC S
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLS 83
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +2
Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC S
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLS 83
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +2
Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC S
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLS 83
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 182 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCT 280
S+ + + GEV L G+H +H+FGD++ GC+
Sbjct: 906 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCS 938
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 182 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCT 280
S+ + + GEV L G+H +H+FGD++ GC+
Sbjct: 697 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCS 729
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 202 RNNYW*AFILLVEENCSTHISVKNAYSFS 116
RN+ F+LL E NC T AYS S
Sbjct: 1017 RNDSSQPFVLLKESNCLTEFGKNGAYSAS 1045
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 202 RNNYW*AFILLVEENCSTHISVKNAYSFS 116
RN+ F+LL E NC T AYS S
Sbjct: 1017 RNDSSQPFVLLKESNCLTEFGKNGAYSAS 1045
>U29488-5|AAL27236.1| 417|Caenorhabditis elegans Hypothetical
protein C56C10.7b protein.
Length = 417
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 78 EFLNSHISSTACLLKLYAFFTEM*VEQFSSTKRMKAHQ*LFLE-KSKDLVRASTVSMYMS 254
+F ++ +SS L FF M ++ +S ++K HQ K ++ + + + +S
Sbjct: 178 KFYSAEVSSNRVLCINVVFFRTMRIKMSTSKPKLKIHQMRICSWKKSSWIQVNIIMLLVS 237
Query: 255 LVT 263
L++
Sbjct: 238 LMS 240
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1714 GSPARFNCVAHSDTPARIRWGFREENGPL 1742
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1807 GSPARFNCVAHSDTPARIRWGFREENGPL 1835
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1807 GSPARFNCVAHSDTPARIRWGFREENGPL 1835
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1714 GSPARFNCVAHSDTPARIRWGFREENGPL 1742
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1807 GSPARFNCVAHSDTPARIRWGFREENGPL 1835
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1807 GSPARFNCVAHSDTPARIRWGFREENGPL 1835
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPV 193
G PA+ CV H D + + ++E+ P+
Sbjct: 1806 GSPARFNCVAHSDTPARIRWGFREENGPL 1834
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,822,111
Number of Sequences: 27780
Number of extensions: 96051
Number of successful extensions: 203
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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