Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O12
         (283 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    65   8e-12
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    62   7e-11
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    58   1e-09
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    32   0.051
At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r...    29   0.48 
At3g15870.1 68416.m02007 fatty acid desaturase family protein si...    28   1.1  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    27   2.6  
At4g08350.1 68417.m01380 KOW domain-containing transcription fac...    26   3.4  
At1g05440.1 68414.m00552 expressed protein ; expression supporte...    26   3.4  
At5g62020.1 68418.m07785 heat shock factor protein, putative (HS...    26   4.5  
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ...    26   4.5  
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla...    25   5.9  
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla...    25   7.8  
At1g61340.1 68414.m06913 F-box family protein contains Pfam PF00...    25   7.8  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 64.9 bits (151), Expect = 8e-12
 Identities = 32/57 (56%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
           KAV VL G  DV G V   Q D+S P  V+  + GL+ G HGFH+HEFGD TNGC S
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCIS 121


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 31/58 (53%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +2

Query: 116 AKAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
           AK V VL+    V+GT+FF Q+ +     VSG V GL  G HGFHVH  GD TNGC S
Sbjct: 2   AKGVAVLNSSEGVTGTIFFTQEGDGV-TTVSGTVSGLKPGLHGFHVHALGDTTNGCMS 58


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
 Frame = +2

Query: 119 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
           +AV ++ GD  V G + F Q D S    V+G++ GLS G HGFH+H FGD TNGC S
Sbjct: 9   RAVALIAGDNNVRGCLQFVQ-DISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 64


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTS 283
           D+ G V F Q        +     GLS G H + ++E+GD TNG  S
Sbjct: 106 DIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAAS 151


>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
           ligase-related similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profile PF03129:
           Anticodon binding domain
          Length = 309

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 107 GMPAKAVCVLHGDVSGTVFFDQKDESSPVVVSGEVKG 217
           G P +A C+ HGD  G VF  +      VV+   +KG
Sbjct: 81  GPPFEAACMTHGDDKGLVFPPKVAPVQVVVIHVPIKG 117


>At3g15870.1 68416.m02007 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 292

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 211 DFSRNNYW*AFILLVEENCSTHISVKNAYSFS-RHAVE 101
           DFS+NN+W A + L E   + H    +A+ FS RH +E
Sbjct: 222 DFSKNNWWVAILTLGEGWHNNH----HAFEFSARHGLE 255


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 143 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNT 268
           DVS  V F +       V   + KGL   KH FH +  G+ T
Sbjct: 2   DVSKVVSFSRNFAVLVKVEGPDPKGLKMRKHAFHQYHSGNAT 43


>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
           family protein chromatin structural protein homolog
           Supt5hp - Mus musculus,PID:g2754752
          Length = 1029

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 MPAKAVCVLHGDVSGTVFFDQKDESSPVVVSGEVKGL 220
           M   AV V+ GD+     + +K +   V++  EVKGL
Sbjct: 427 MKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGL 463


>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 SSPVVVSGEVKGLSKGKHGFHVHE 253
           SS  V+SG V   ++GK G+ +HE
Sbjct: 285 SSITVLSGRVTEWTEGKFGYSIHE 308


>At5g62020.1 68418.m07785 heat shock factor protein, putative (HSF6)
           / heat shock transcription factor, putative (HTSF6)
           identical to heat shock transcription factor 6 (HSF6)
           SP: Q9SCW4 from [Arabidopsis thaliana] ;contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 299

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 269 WYCHQTHVHGN 237
           WYCHQT   GN
Sbjct: 158 WYCHQTKTTGN 168


>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 535

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 179 ESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGC 277
           +S  V+  GE++  S  KH   + E  D  N C
Sbjct: 240 KSYEVIEEGEIRHFSHEKHNLKLQEESDANNEC 272


>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 380

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 203 GEVKGLSKGKHGFHVHE 253
           G VK +S+G+H  H+H+
Sbjct: 240 GNVKTISQGRHSAHLHD 256


>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 203 GEVKGLSKGKHGFHVHE 253
           G VK +S+G+H  H+HE
Sbjct: 242 GSVKRISQGRHLSHLHE 258


>At1g61340.1 68414.m06913 F-box family protein contains Pfam
           PF00646: F-box domain; similar to late embryogenesis
           abundant protein GI:1350540 from [Picea glauca]
          Length = 185

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 80  IS*QSHIFYGMPAKAVCVLHGDVSGTVFFDQKDESSPVVVSG 205
           I+ QSH  Y  P K     HG       FD +D+   +   G
Sbjct: 117 IAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPG 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,410,152
Number of Sequences: 28952
Number of extensions: 88669
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)