Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O10
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 29 0.70
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.2
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 2.8
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 3.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 4.9
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.9
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 6.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 8.6
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 497 SAAKPANGGNIANPNVPKASCRPTSPRPNEVSR-VAITHAAPNRAR 363
+AA + A P +P A+ +PT P E+S A++H + N ++
Sbjct: 78 NAATSFSTNEPAKPPIPNAATKPTFPPQTEISNPPAVSHQSKNTSQ 123
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 508 PAFAPRLNQLTAGILPIPMYRRRVAGQHHRGLMKSLA*L*HMRHPTELDQPSA 350
P +P + TA PIP+ R HH GL L H H + + P++
Sbjct: 91 PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLKNLLEKAMHPGHKSNANSPTS 143
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 70 SLTAPDLPEDNSTSDSNWCTYRTAGPSKCLVPPDRLPNITQDNN 201
++T +PE N T+ S + ++ + ++PP L N TQ NN
Sbjct: 580 AITNLSIPESNRTNSS--ASSKSFTMNDLILPPLHLKNTTQTNN 621
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 56 YEYLCPLRHLISPRTIALL-IPTG 124
Y+Y+C L+H + IALL +P+G
Sbjct: 22 YQYMCDLKHSLDAGGIALLEMPSG 45
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = -1
Query: 599 DIGMWLSNNKIKAPINMNTACRANGITKGVSGICSAAKPANGGNIANPNVPKASCRPTSP 420
D+G + N + A N NT + G G+ S A N NP+ + +
Sbjct: 216 DMG-YSRNFPVHASSNYNTTHTSGG------GVHSGAATPNAYVNNNPSSSRRESESPAN 268
Query: 419 RPNEVSRVAITHAAP 375
PN S +THA P
Sbjct: 269 SPNITSSAGMTHAQP 283
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 297 ISYHESTFGIGQYTVWFVIRVENL 226
+ +HE T G+G T W V ENL
Sbjct: 244 VLFHEITHGLGFSTGWGVFGYENL 267
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 169 PGAPSTLMVQPYDMYTSWNQK 107
PG P TL+V P D W+ K
Sbjct: 729 PGKPLTLVVHPADGSAEWSTK 749
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 470 NIANPNVPKASCRPTSPRPNEVSRVAITHAAPNR 369
N+ +V KA +P P +++SR +T ++P R
Sbjct: 554 NVNKMSVRKALIKPFHPPISKISRTRLTVSSPER 587
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 13 YNGQCNVYMKHVPKLRIPLSLTAPDLPEDNSTSDSNWCTYRTAG 144
+ G NVY + P +S T P +N+T++++ T + AG
Sbjct: 791 FGGHSNVYNRQQPGNVSGMSGTQTSNPINNATANTSGMTEKAAG 834
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 381 RMCYSYARDFIRPR*CWPAT 440
R+ YSYARD + P W AT
Sbjct: 371 RIAYSYARDGVLPYSEWVAT 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,530
Number of Sequences: 5004
Number of extensions: 58237
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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