Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O10
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 32 0.31
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 32 0.41
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 30 1.2
02_02_0737 - 13529180-13529543,13530661-13531178 29 2.2
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 28 5.0
02_04_0172 - 20595357-20596129,20596994-20597138 28 5.0
11_05_0009 - 18349593-18350477 28 6.6
08_02_0727 - 20456854-20456959,20457169-20457266,20457575-20457871 28 6.6
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 28 6.6
07_03_0970 - 23034521-23034928,23036173-23037081 27 8.7
05_06_0150 - 25994562-25995980 27 8.7
05_04_0334 - 20341186-20341422,20341509-20341569,20341652-203417... 27 8.7
01_01_0220 + 1866989-1868393,1868465-1869153 27 8.7
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 50 RNYEYLCPLRHLISPRTIALLIPTGVH 130
RN L LRHL+ PR + IP+G+H
Sbjct: 1137 RNVSALSNLRHLVLPREFPVTIPSGIH 1163
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 31.9 bits (69), Expect = 0.41
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +1
Query: 307 TFWIYFILRVIADIWPTAGLALLGAACVIATRETSLGRGDVGRQLAFGTLGLAIFPPLAG 486
TFW++ + +VI + T GA T L R +GR L + +A F +
Sbjct: 392 TFWVFLVNKVIIPV--TRACFANGAEM------TQLQRIGIGRFLMIFAMAIAAFLEMKR 443
Query: 487 LAAEQMPDTPFVIPFALHAVFMLIGA 564
L + Q D P I + L F++ GA
Sbjct: 444 LESVQGGDQPLSIAWQLPQYFVIAGA 469
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 563 APINMNTACRANGITKGVSGICSAAKPANGG 471
A I++ T + GI V G C AA P+NGG
Sbjct: 296 AAISLPTQLASQGIISNVFGHCIAADPSNGG 326
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 100 NSTSDSNWCTYRTAGPSKCLVPPDRLPNITQDNNTCSPAV 219
++ S+ C ++ A PS+ PP LP+ T ++T SP V
Sbjct: 99 STAPSSSSCQFQAAAPSR---PPSALPSPTASSSTSSPPV 135
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 149 DGPAVRYVHQLESEVLLSSGRSGAVRDKGIRSFG 48
D AVRY+ +++VL+++ VRD+G+R FG
Sbjct: 108 DWEAVRYLLDADADVLVAARL--VVRDRGLRRFG 139
>02_04_0172 - 20595357-20596129,20596994-20597138
Length = 305
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 431 PTSPRPNEVSRVAITHAAPNRARPAVGHMSAITLNIKYIQKVAVGSP 291
PTSP P VS A AP A A+GH S T+ AV P
Sbjct: 154 PTSPSPTSVSASAAGDEAPAMA-AAIGHESGPTVGEGAAWLAAVAVP 199
>11_05_0009 - 18349593-18350477
Length = 294
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 482 ANGGNIANPNVPKASCRPTSPRPNEVSRVAITHAAPNRARPAVGHMSAITLNIKY 318
A G NP+ P+++ R SPR V++ I +P R RP G + + I +
Sbjct: 69 AEPGVRPNPSRPRSATRSLSPR--HVTKTTIWRDSPAR-RPTTGELGLLKARILF 120
>08_02_0727 - 20456854-20456959,20457169-20457266,20457575-20457871
Length = 166
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 512 VSGICSAAKPANGGNIANPNVPKASCRPTSPRPNEVSR 399
V G+CS GG + ASC T+PR E SR
Sbjct: 40 VDGVCSQGGGGGGGEPLLRRIRAASCE-TAPRLREASR 76
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 64 PLSLTAPDLPEDNSTSDSNWCTYRTAGPSKCLVPPDRLPNITQDNNTCSPAVRCQVLDPY 243
P L DL N D N+ + + LVPP+ N+TQ T + C + DP
Sbjct: 597 PEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYI-DPE 655
Query: 244 DEPDGVL 264
+ G+L
Sbjct: 656 YQQTGML 662
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 497 SAAKPANGGNIANPNVPKASCRPTSPRPNEVSRVAITHAAPNRA 366
+++ A G + +NPN A +P PN S A P A
Sbjct: 54 TSSASAAGSDPSNPNADPAQSSAANPNPNSSSSAAAASVPPGLA 97
>05_06_0150 - 25994562-25995980
Length = 472
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 229 VLDPYDEPDGVLADAECRLVIGDPTATFWI 318
V+DP + D + ADA RL G+P+ TF I
Sbjct: 38 VIDPPNN-DAMSADAMARLAAGNPSVTFRI 66
>05_04_0334 -
20341186-20341422,20341509-20341569,20341652-20341719,
20341800-20342009,20342714-20342754,20342909-20342958,
20343069-20343157,20343233-20343307,20343498-20343598,
20343758-20343812,20343909-20344025,20344672-20344892,
20345525-20345582,20345706-20345822
Length = 499
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 527 GITKGVSGICSAAKPAN--GGNIANPNVPKASCRPTSPRPNEVSRVAI 390
G+ +G +G AA+P+N GG+ A P+V R + N+ + V+I
Sbjct: 451 GLKEGSAGAGVAAEPSNGGGGDTAGPSVKIEMMRRAAREGNDEAGVSI 498
>01_01_0220 + 1866989-1868393,1868465-1869153
Length = 697
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -1
Query: 584 LSNNKIKAPINMNTACRANGITKGVSGICSAAKPANGGNIANPNVPKA-SCRPTSPRPNE 408
+SNN + I + A G G +G+CSA P PN A + T P P
Sbjct: 206 VSNNLLTGRIPVAMAKFPVGAFGGNAGLCSAPLPPCKDEAQQPNASAAVNASATPPCPPA 265
Query: 407 VSRVAITHAA 378
+ VA + +A
Sbjct: 266 AAMVASSPSA 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,176,206
Number of Sequences: 37544
Number of extensions: 423733
Number of successful extensions: 1208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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