Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O10
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)                     31   0.72 
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)               31   0.96 
SB_44093| Best HMM Match : Ycf9 (HMM E-Value=0.73)                     30   1.3  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                29   2.9  
SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)                 29   2.9  
SB_39064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               29   3.9  
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)                       28   5.1  
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)               28   5.1  
SB_17664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13)                 28   6.7  
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)          28   6.7  
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)
          Length = 327

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 46  VPKLRIPLSLTAPDLPEDNSTSDSNWCTYRTAGPSKCLVPPDRLPNITQDNNTCSPAVRC 225
           +  L++P    +  +    S+ DS+  TY  A P K ++    LP      NT SP VR 
Sbjct: 121 IKALQVPAPRRSSLMQPSTSSGDSSESTYEQATPKKGILQCRDLPAKDLRRNTSSPYVRI 180

Query: 226 QVL 234
             L
Sbjct: 181 YAL 183


>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
          Length = 774

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 109 SDSNWCTYRTAGPSKCLVPP--DRLPNITQDNNTCSPA 216
           S+ N C  R+ G  +C + P  +   N+T DN T SPA
Sbjct: 199 SNGNECDKRSCGSKECGINPLSEMATNLTYDNQTKSPA 236


>SB_44093| Best HMM Match : Ycf9 (HMM E-Value=0.73)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +1

Query: 310 FWIYFILRVIADIWPTAGLALLGAACVIATRETSLGRGDVGRQLAFGTLGLAIFPPLAGL 489
           FW   +L  + D + +A + ++ +  +I    TS      G+Q  FG LG  +   L+GL
Sbjct: 138 FWTSLLLVGLGDFF-SAPVTVIMSGTIIYWEGTSA----FGKQRVFGALGFGLGSYLSGL 192

Query: 490 AAEQMPDTPFVIPFALHAV 546
           A ++     +  P + HA+
Sbjct: 193 AIDETSGFNYFHPSSPHAL 211


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 497 SAAKPANGGNIANPNVPKASCRPTSP-RPNEVSRVAITHAAPN 372
           S  +P +    A+P  P++  RP+SP RP   +R A T  +P+
Sbjct: 293 SPQRPKSPNRPASPQRPRSPNRPSSPQRPRSPNRPASTSQSPS 335


>SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)
          Length = 507

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 418 RGDVGRQLAFGTLGLAIFPPLAGLAAEQMPDTPFVIPFALHAVF-MLIGA 564
           RG    Q AF  L   I   +  L A ++ D PF+ P  + AVF  L+GA
Sbjct: 328 RGQGSDQAAFLYLAYGIATTIGRLVAGKILDVPFLNPVYVFAVFATLVGA 377


>SB_39064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 121 WCTYRTAGPSKCLVPPD----RLPNITQDNNTCSPAVRCQV 231
           WC  +       L PP     R+ ++ +++NTC P  RC++
Sbjct: 72  WCQKQVQVKRDKLCPPGYWCRRMADVKRESNTCPPGYRCRL 112


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -1

Query: 524 ITKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRPNEVSRVAITHAAPNRARPA 357
           +T+     CS  KPA    +  PN+P++S  P+S  P   S + I  A   ++RPA
Sbjct: 228 VTRCTDTKCS--KPA----LVTPNIPRSSDTPSS--PPATSSITIPKATDTQSRPA 275


>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 164 GTKHFDGPAVRYVHQLESEVLLSSGRSG 81
           GT++FDG   RYV    ++VL   GR+G
Sbjct: 530 GTEYFDGKKCRYVDFPITDVLQMMGRAG 557


>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
          Length = 622

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 458 PNVPKASCRPTSPRPNEVSRVAITHAAPNRARPAVGHMSAITLNIKYIQKV 306
           P +P       S  PN +SRV + H  P   +PAV    + +   +Y   V
Sbjct: 404 PQLPPYMASRQSQNPNPMSRVPMQHHQPILPKPAVDMFGSPSTGPRYPSSV 454


>SB_17664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 256 GVLADAECRLVIGDPTATFWIYFILRVIADI 348
           GV+ DA CR+VI    +T W+  I  +I  I
Sbjct: 101 GVIGDATCRMVIWLYNSTDWVSLITLLIISI 131


>SB_11256| Best HMM Match : MFS_1 (HMM E-Value=1.7e-13)
          Length = 506

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +1

Query: 253 DGVLADAECRLVIGDPTATFWIYFILRVIADIWPTAGLALLGAACVIATRETSLGRGDVG 432
           DGVL  ++    + + + TFW+  ++ +  D++    L ++ A           G  + G
Sbjct: 150 DGVLEASKYHPYLTN-SQTFWLLLVIVLCGDVFYAPILPVMDATVTYWE-----GSQNFG 203

Query: 433 RQLAFGTLGLAIFPPLAGLAAEQ 501
           +Q  F  LG ++   L+GLA ++
Sbjct: 204 KQRMFDALGFSLGSLLSGLAMDK 226


>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
          Length = 922

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -2

Query: 592 ACGYRITKSKLQST*TLHAERTVSRKAYPAFAPRLNQLTAGILPIPMYRRRVAGQHHRGL 413
           AC  R  K KL     +   R +S    P+F P+L   +   +P P Y   +  +    +
Sbjct: 29  ACHLRKRKQKLNGGLLMGYPRALSSLFIPSFGPQLRANSPFRIPDPSYELTLHSEFRNPV 88

Query: 412 MKSL 401
           + SL
Sbjct: 89  ISSL 92


>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 PAVSWFSRGANAGYAFRDTVRSACSVH 551
           PA+ WF R + + Y  R  +R  C ++
Sbjct: 677 PAIDWFLRNSMSNYTTRSRLRDDCIIN 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,887,643
Number of Sequences: 59808
Number of extensions: 484632
Number of successful extensions: 1457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)