Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O10
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 29 2.4
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 2.4
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 2.4
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si... 29 2.4
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 29 3.2
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 29 3.2
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 27 7.3
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 27 7.3
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 27 7.3
At2g47630.1 68415.m05942 esterase/lipase/thioesterase family pro... 27 7.3
At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit, c... 27 7.3
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 7.3
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 27 9.6
At3g62940.2 68416.m07071 OTU-like cysteine protease family prote... 27 9.6
At3g62940.1 68416.m07070 OTU-like cysteine protease family prote... 27 9.6
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 164 GTKHFDGPAVRYVHQLESEVLLSSGRSG 81
GT++FDG RYV +E+L GR+G
Sbjct: 1682 GTEYFDGKTKRYVDFPLTEILQMMGRAG 1709
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 548 NTACRANGI-------TKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRP--NEVSRV 396
N AC AN T +GI S N G I+ P P + TSP P N++
Sbjct: 198 NVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQLPVN 257
Query: 395 AITHAAPN 372
A ++A+P+
Sbjct: 258 ATSNASPS 265
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 548 NTACRANGI-------TKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRP--NEVSRV 396
N AC AN T +GI S N G I+ P P + TSP P N++
Sbjct: 459 NVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQLPVN 518
Query: 395 AITHAAPN 372
A ++A+P+
Sbjct: 519 ATSNASPS 526
>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
similar to beta-hexosaminidase precursor SP:P43077 from
[Candida albicans]
Length = 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 205 CSPAVRCQVLDPYDEPDGVLADAECRLVIGDPTATFWIYFILRVIAD--IWPTA 360
C+P Q + YD DG+L + E +LV+G A W + D +WP A
Sbjct: 462 CAPFKTWQSIYNYDIADGLLNEEERKLVLGGEVA-LWSEQADSTVLDSRLWPRA 514
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -1
Query: 554 NMNTACRANGITKGVSGICSAAKPAN--GGNIANPN--VPKASCRPTSPRPNEVSRVAIT 387
N NT + G V + S A P + GG AN + VP+ RP + N + +V +
Sbjct: 409 NNNTDPNSGGYFAYVRRVLSYANPFSYFGGGTANASSSVPERQTRPNTEVRNNLGQVGTS 468
Query: 386 HAAPNRARPAVGHMSAITLNI 324
P+ R V + T I
Sbjct: 469 FQDPSEGRSNVRNRRPTTSRI 489
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -1
Query: 554 NMNTACRANGITKGVSGICSAAKPAN--GGNIANPN--VPKASCRPTSPRPNEVSRVAIT 387
N NT + G V + S A P + GG AN + VP+ RP + N + +V +
Sbjct: 409 NNNTDPNSGGYFAYVRRVLSYANPFSYFGGGTANASSSVPERQTRPNTEVRNNLGQVGTS 468
Query: 386 HAAPNRARPAVGHMSAITLNI 324
P+ R V + T I
Sbjct: 469 FQDPSEGRSNVRNRRPTTSRI 489
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 55 LRIPLSLTAPDLPEDNSTSDSNWCTYRTAGPS 150
++ PLS T+ P+ ++S+ NW ++ A PS
Sbjct: 300 IQAPLSTTSQPAPQPTTSSNDNWASF-DAAPS 330
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 55 LRIPLSLTAPDLPEDNSTSDSNWCTYRTAGPS 150
++ PLS T+ P+ ++S+ NW ++ A PS
Sbjct: 300 IQAPLSTTSQPAPQPTTSSNDNWASF-DAAPS 330
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 25 CNVY---MKHVPKLRIPLSLTAPDLPEDNSTSDS-NWCTYRTA 141
C+++ + H L+ PL+ T PD E TSDS ++ TYRTA
Sbjct: 61 CHIFPRKLTHPYHLQHPLTFTFPDY-ESGITSDSFDYETYRTA 102
>At2g47630.1 68415.m05942 esterase/lipase/thioesterase family
protein similar to monoglyceride lipase from [Homo
sapiens] GI:14594904, [Mus musculus] GI:2632162;
contains Interpro entry IPR000379
Length = 351
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 37 MKHVPKLRIPLSLTAPDLPEDNSTSDS-NWCTYRTAGPSKCLVPPDRLPNIT 189
+K P + L+ PD D +D NW RTA P+ V P R+ N T
Sbjct: 260 LKLYPGMWHALTSGEPDCNVDLVFADIINWLDLRTADPASLTVTPIRVGNTT 311
>At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit,
component I-2 (ASA2) identical to SP|P32069
Length = 621
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 43 HVPKLRIPLSLTAPDLPEDNSTSDSNWCTYRTAGPS-KCLVPP 168
H P LR PLSL +P N + S + PS KC P
Sbjct: 31 HFPSLRFPLSLKSPPATSLNLVAGSKLLHFSRRLPSIKCSYTP 73
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 458 PNVPKASCRPTSPRPNEVSRVAITHAAPNRAR-PAVGH 348
PN P+A RP + PNE S T AP R+ PA G+
Sbjct: 476 PNPPRAPPRPQTRLPNETSNEQPT--APGRSSGPASGY 511
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 61 IPLSLTAPDLPEDNSTS---DSNWCTYRTAGPSKCLVPPDRLPNITQDNNTCSPA 216
+PL L P +P + S S +SN +++ A SK + PP P Q +T + A
Sbjct: 282 VPL-LPPPGIPSNESESRPAESNASSFQNANLSKMVAPPPPAPLHQQHQSTFAGA 335
>At3g62940.2 68416.m07071 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 332
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 351 PYVSYNP*YKIYPESSCRISYHESTFGIGQY 259
P V Y+ +SS +SYH FG+G++
Sbjct: 290 PDVEMGKEYRSGDDSSLMLSYHRHAFGLGEH 320
>At3g62940.1 68416.m07070 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 316
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 351 PYVSYNP*YKIYPESSCRISYHESTFGIGQY 259
P V Y+ +SS +SYH FG+G++
Sbjct: 274 PDVEMGKEYRSGDDSSLMLSYHRHAFGLGEH 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,441
Number of Sequences: 28952
Number of extensions: 313601
Number of successful extensions: 853
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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