Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O09
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   136   1e-33
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    32   0.023
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   1.5  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   1.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   2.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   4.5  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    24   6.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.0  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   7.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   7.9  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    24   7.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  136 bits (328), Expect = 1e-33
 Identities = 65/103 (63%), Positives = 81/103 (78%)
 Frame = +3

Query: 42  ALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEMLGGRVK 221
           ALLSV DKTGLL L KAL+  G++L+GSGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 222 TLHPAVHAGILARLSNTDQEDMKRQNFDLISVVVCNLYPFVQT 350
           TLHPAVH GILAR   +D++D+  Q+ + I +VVCNLYPF +T
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRET 105


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 32.3 bits (70), Expect = 0.023
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 217 TRPPSISGALVISETSRTESPAFLSAVAVPPLPTS*RPISDKALPKISKPVLSDTLSNAN 38
           T PP  S A   + TS   +PA ++A ++PP+P      +  A+P +S P +    +  +
Sbjct: 209 TLPPGFSPATP-APTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQH 267

Query: 37  FP 32
           FP
Sbjct: 268 FP 269


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 159 VLRSSAQSLCHRYRLAEDPF--QTKLCLKSASPSYLT 55
           VL++S ++L HR  L+  PF  Q  + L + S +Y T
Sbjct: 236 VLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYST 272


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 234 AVHAGILARLSNTDQEDMKRQN 299
           ++HAG+  RLS TD  D +  N
Sbjct: 272 SIHAGLRTRLSGTDYYDYEEDN 293


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 136 AVPPLPTS*RPISDKALPKISKPVLSDTLS 47
           AV P+    +PIS ++L  +   ++SD+LS
Sbjct: 571 AVKPIKNKPKPISFESLSAVGNLIISDSLS 600


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 166 TESPAFLSAVAVPPLPT 116
           T  PAF SA+A+P +P+
Sbjct: 398 TAEPAFKSAMAIPDMPS 414


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 114 LVGSGGTATALRNAGLSVLDVSDI 185
           L G GG+A  LRNA LS++    +
Sbjct: 390 LNGLGGSADFLRNAKLSIMHTPSV 413


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 154 AFLSAVAVPPLPTS*RPISDKALPKISKPVLSDTLSNANFPLDA 23
           A   AVA+PP+P          L  + K   +  LS  N P D+
Sbjct: 72  AHFDAVALPPIPKGAPNFLADVLNLLKKKYYATDLSFVNSPADS 115


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 214 RPPSISGALVISETSRTESPAFLSAVAVPPLPTS*RPISDKALPKISKPVLSDTL-SNAN 38
           +PPS + A    E  +T SP F S+   PP P           P+ S+P   ++  +N  
Sbjct: 214 QPPSYA-ASTQPEFQQTTSPIFSSSSTPPPPP-----------PRPSQPTSGESQNTNPR 261

Query: 37  FPLDAMS 17
           FP  A S
Sbjct: 262 FPFSAQS 268


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 195 PEMLGGRVKTLHPAVHAGILARLSNTDQEDMKRQNFDLISVVVCNLY 335
           PE++  + + L     AG  AR+ N    D    + DL+SV +C+++
Sbjct: 320 PEVMWSKPRILVMEYVAG--ARIDNLSFMDEHSISRDLVSVDICHIF 364


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 217 TRPPSISGALVISETSRTESPAFLSAVAVPPLPTS*RP 104
           TRP S + ++ I   + T +P+ +  +  P LP++  P
Sbjct: 533 TRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPAP 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,466
Number of Sequences: 5004
Number of extensions: 24022
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)