Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O09
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   140   3e-34
AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical ...    27   3.8  
U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    26   6.6  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    26   6.6  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  140 bits (339), Expect = 3e-34
 Identities = 65/110 (59%), Positives = 83/110 (75%)
 Frame = +3

Query: 21  MASNGKLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPE 200
           M     LA++SVSDKTGL+ L   L   GL L+ SGGTA A+R+ G+ V DV+D+TK PE
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 201 MLGGRVKTLHPAVHAGILARLSNTDQEDMKRQNFDLISVVVCNLYPFVQT 350
           MLGGRVKTLHPAVH GILAR + +D++D+++ N   +SVVVCNLYPF +T
Sbjct: 61  MLGGRVKTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFKKT 110


>AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical
           protein F16B4.3 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  LSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEMLGGRVKTLHPAVHAGILARL 263
           LS+  L ++  G   +  RN+ LS  D+  + KA   L   ++ +HP  H  +L  L
Sbjct: 561 LSKRKLVMIDLGEIMSWSRNSILSEADIQSLEKALNSLREHLRDVHP--HMSVLPTL 615


>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 57  SDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSD--ITKAP 197
           +D TG ++LG A   +    VGS G  T L+     V  +++  IT AP
Sbjct: 65  TDTTGPILLGTAQGSIIELNVGSTGMMTTLKELTSQVAQIAEQRITSAP 113


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
            protein C47E12.5b protein.
          Length = 1028

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 219  KTLHPAVHAGIL-ARLSNTDQEDMK 290
            K+LHP+VHA +L   +S+ D ED++
Sbjct: 996  KSLHPSVHALVLEPMMSDPDGEDVE 1020


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
            protein C47E12.5a protein.
          Length = 1113

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 219  KTLHPAVHAGIL-ARLSNTDQEDMK 290
            K+LHP+VHA +L   +S+ D ED++
Sbjct: 1081 KSLHPSVHALVLEPMMSDPDGEDVE 1105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,408
Number of Sequences: 27780
Number of extensions: 138378
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)