Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O09
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.35 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 312 LSGQSSDASYPPDRCSKV*PICRREQPDVRSSHGLQA 202
           L    ++AS P    + V P CRR++ ++ +++ L A
Sbjct: 80  LQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLA 116


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 138 TALRNAGLSVLDVSDIT---KAPEMLGGRVKTLHPAV 239
           +A +N  ++ +D S +     AP MLGGR  T +  V
Sbjct: 319 SAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVV 355


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 279 EDMKRQNFDLISVVVCN 329
           EDMK   FDL++    N
Sbjct: 172 EDMKLSQFDLVANPTAN 188


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 117 VGSGGTATALRNAGLSVLDVSDITKAPEMLGGRVK 221
           +  GG  T   +  L VLD   IT     L G +K
Sbjct: 34  LSEGGNDTRSADCTLRVLDPGAITGLVASLDGALK 68


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 129 HRYRLAEDPFQTKLCLKSAS 70
           +R    E P+Q + C KS S
Sbjct: 111 YRTHTGEKPYQCEYCSKSFS 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 42  LIFHWMPCLPF 10
           LI HW  CL F
Sbjct: 288 LIGHWSGCLQF 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 42  LIFHWMPCLPF 10
           LI HW  CL F
Sbjct: 256 LIGHWSGCLQF 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,567
Number of Sequences: 438
Number of extensions: 1888
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)