Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O09
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...   103   3e-23
At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinosit...    28   2.1  
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera...    27   3.6  
At5g53340.1 68418.m06629 galactosyltransferase family protein co...    27   4.7  
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative         27   4.7  
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ...    26   6.3  
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ...    26   6.3  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                26   8.3  
At5g03640.1 68418.m00323 protein kinase family protein contains ...    26   8.3  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score =  103 bits (248), Expect = 3e-23
 Identities = 54/109 (49%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
 Frame = +3

Query: 24  ASNGKLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEM 203
           +S  K AL+S+SDK  L  LG  L E+G  +V +GGTA+ L NAG+SV  V  +T  PEM
Sbjct: 68  SSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEM 127

Query: 204 LGGRVKTLHPAVHAGILARLS-NTDQEDMKRQNFDLISVVVCNLYPFVQ 347
           L GRVKTLHP +H GILAR       E +         VVV NLYPF +
Sbjct: 128 LDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYE 176


>At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinositol
           de-N-acetylase-related similar to SP|Q9Y2B2
           N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis,
           class L protein) (PIG-L) {Homo sapiens}
          Length = 257

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 229 CKVFTRPPSISGALVISETSRTESPAFLSAVAVP 128
           CK+F R  SISGA ++ +    +    L  +A P
Sbjct: 19  CKIFFRATSISGAAILDDGKTPQKKNVLFVIAHP 52


>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
           putative similar to polynucleotide phosphorylase
           GB:AAC50039 [Pisum sativum], identical to putative
           polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
           thaliana]
          Length = 922

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 15  ADMASNGKLALLSVSDKTGLLILGKALSEMGLQLVGSGG--TATALRNAGLSVLDVSD 182
           A+MA       LS+S    L+++ K        L+GSGG    + +  +G+  +D+ D
Sbjct: 674 AEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQD 731


>At5g53340.1 68418.m06629 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 338

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 183 ITKAPEMLGGRVKTLHPAVHAGILARLSNTDQEDMKRQ 296
           ++K+P++  G      P V  GI+  L N  + D  RQ
Sbjct: 94  VSKSPKLADGTETKKRPLVVIGIMTSLGNKKKRDAVRQ 131


>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 
          Length = 1049

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 87  KALSEMGLQL-VGSGGTATALRNAGLSVLDVSDITKAPEMLGGRVKTLHPAVHAGILARL 263
           K L E  + L +G GGTA A  N+   +LD +  T    ++  R  +L+  V   IL RL
Sbjct: 797 KTLREADVSLAMGVGGTAAAKENSDFIILDDNFATIVKCIIWSR--SLYNNVQKSILFRL 854

Query: 264 S 266
           +
Sbjct: 855 T 855


>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
           Helicase [Arabidopsis thaliana] GI:11121447; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 620

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 296 LTLHILLIGVRKSSQYAGVNSRM 228
           L++H+  IG+  ++ +AG+NS+M
Sbjct: 179 LSVHLSSIGISSAAYHAGLNSKM 201


>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
           Helicase [Arabidopsis thaliana] GI:11121447; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 713

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 296 LTLHILLIGVRKSSQYAGVNSRM 228
           L++H+  IG+  ++ +AG+NS+M
Sbjct: 272 LSVHLSSIGISSAAYHAGLNSKM 294


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 217 TRPPSISGALVISETSRTESPAFLSAVAVPPLP 119
           T PP++S A   S  S   SP+  +  A PP P
Sbjct: 51  TPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAP 83


>At5g03640.1 68418.m00323 protein kinase family protein contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 926

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 36  KLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAG 158
           K+ LL  +  +  ++ GK ++++   +   GG   ALRN G
Sbjct: 255 KVRLLYANTPSSTIVNGKRVAKLTRTIPRGGGAKPALRNKG 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,307,323
Number of Sequences: 28952
Number of extensions: 135301
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)