Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O06
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   1.9  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   2.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   5.8  

>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 54  RAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKA 218
           + FY S +E N T L  +     + +    Y   KDK++   P   ++LM + K+
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 66  SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 203
           S  H+ N + L + +   +    K  YT +KD ++V SP G+   M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 282 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 193
           P++N HCLK C      L +   C  A  S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 1    ERT*SSYVYWRLSRSATCERFIPLTTSTTGQP 96
            +R+ S+Y+  + S  A CE FI L   + G+P
Sbjct: 939  DRSDSNYISIKESGYAICEEFIDLLIKSNGEP 970


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 111 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 230
           D +S+    +T   S  +N++   +GV   +LL  +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 63   YSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRA 242
            Y+S  E++  +  +   K S++  K  +TS +D+ ++ +    +++  +Y  G     + 
Sbjct: 864  YASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRA----VVITQIYYGGTNRLIKW 919

Query: 243  E-IDKFLGNGDYSGVANPYISL 305
            E + K   N D   +   Y+S+
Sbjct: 920  EAVQKCFPNRDIYALTRRYLSI 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,061
Number of Sequences: 5004
Number of extensions: 59691
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)