Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O02
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0409 - 8210482-8210770,8210861-8211156                           29   1.5  
11_06_0681 + 26248299-26248838,26249089-26249222,26250245-262506...    28   3.4  
05_03_0625 - 16325827-16326495                                         27   4.5  
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575...    27   4.5  
06_01_1079 + 8832779-8833960                                           27   5.9  
05_03_0600 + 16031952-16032614                                         27   5.9  
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822...    27   5.9  

>03_02_0409 - 8210482-8210770,8210861-8211156
          Length = 194

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 322 LAVDSYNIRWHFAYNTSRNVCYYLISLHRHH 230
           + VDS N+RW FA   S  V  +++S  R H
Sbjct: 125 MPVDSRNVRWSFAVAYSTLVLTFIVSQPRTH 155


>11_06_0681 +
           26248299-26248838,26249089-26249222,26250245-26250630,
           26250781-26251283,26251335-26251538
          Length = 588

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 344 PVGWSELWIGYSFVMHTGAGGQG 412
           P GW +L +  SFV +TG GG G
Sbjct: 490 PQGWMKLNVDGSFVPNTGKGGIG 512


>05_03_0625 - 16325827-16326495
          Length = 222

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 414 PPCPPAPVCMTKL*PIHNSLHPT 346
           PP P AP C T L P     HPT
Sbjct: 21  PPPPAAPRCSTALSPSSPPFHPT 43


>03_05_0451 -
           24456923-24457069,24457161-24457310,24457408-24457513,
           24457715-24458040,24458129-24458263,24458350-24458430,
           24458516-24458704,24458794-24458986,24459068-24459174,
           24459280-24459354,24459446-24459601,24459745-24459828,
           24459933-24460046,24460119-24460214,24460302-24460392,
           24460500-24460615,24460878-24461037,24461964-24462217
          Length = 859

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 254 IVTYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWS-ELWIGYSFVMHTGA 400
           +V  + R  +   PS  +    +T + PG P   +   WIG S+  HTGA
Sbjct: 683 VVASVQRVAMAIAPSR-LGGQIETKNPPGSPEAHTLARWIGRSYRFHTGA 731


>06_01_1079 + 8832779-8833960
          Length = 393

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 248 NEIVTYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTGAGGQG 412
           N+I   + R      P  ++    +TLD+ G    W   +     + H GAGG G
Sbjct: 26  NQIKRLLLRFPSRTAPVRLLQSRFKTLDLLGRAANWLRKYPSCFDLFHGGAGGDG 80


>05_03_0600 + 16031952-16032614
          Length = 220

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 414 PPCPPAPVCMTKL*PIHNSLHPT 346
           PP P AP C T L P     HPT
Sbjct: 21  PPPPAAPRCSTALSPSSPLFHPT 43


>04_01_0625 -
           8222105-8222462,8222574-8222926,8223029-8223204,
           8223318-8223555,8226983-8227423
          Length = 521

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 336 GMSNVWLWTAITLDGTSHTTHLEMYVTISFPY 241
           G+  VW WT   L+GT+  T   MY    FP+
Sbjct: 37  GVGGVWAWT---LEGTALQTPRPMYQYSDFPW 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,261
Number of Sequences: 37544
Number of extensions: 258298
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)