Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_O02
(414 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 195 1e-50
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 3e-36
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 104 3e-23
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 100 9e-22
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.070
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 31 0.28
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 31 0.28
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14) 31 0.50
SB_10559| Best HMM Match : HAT (HMM E-Value=2) 31 0.50
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.66
SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7) 29 1.1
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 1.1
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 28 3.5
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 3.5
SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 195 bits (476), Expect = 1e-50
Identities = 81/127 (63%), Positives = 100/127 (78%)
Frame = +2
Query: 8 VPQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASR 187
VP+C LW+GYSLLY+ GNE+AH QDLG GSC+++FSTMPFLFC++N+VCN ASR
Sbjct: 1586 VPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINNVCNLASR 1645
Query: 188 NDRSYWLSTGQPIPMMPV*GNEIVTYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELW 367
ND S+WLST +PIPMMPV + YI RC VCEV S+V+AVHSQ++ +P CP GWS LW
Sbjct: 1646 NDYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLW 1705
Query: 368 IGYSFVM 388
GYSF+M
Sbjct: 1706 QGYSFLM 1712
Score = 84.2 bits (199), Expect = 4e-17
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 254 IVTYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTGAGGQG 412
++ YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+MHT AG G
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDG 1763
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = +2
Query: 8 VPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYAS 184
VP C G LW GYS L++ Q L GSC+ F PF+ C C+Y
Sbjct: 1737 VPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRGTCHYYG 1796
Query: 185 RNDRSYWLSTGQ-------PIPMMPV*GNEIVTYISRCVVCE 289
+ S+WL+T P P GN + +SRC VC+
Sbjct: 1797 -STYSFWLATVDQNKQFRIPRPETLKAGN-LRERVSRCQVCQ 1836
Score = 31.5 bits (68), Expect = 0.28
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 314 HSQTLDIPGCPVGWSELWIGYSFVMHTG 397
HSQT+ +P CP LW GYS + G
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYSLLYVQG 1607
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 147 bits (357), Expect = 3e-36
Identities = 60/104 (57%), Positives = 80/104 (76%)
Frame = +2
Query: 11 PQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRN 190
P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+C++ CNYASRN
Sbjct: 1473 PECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRN 1532
Query: 191 DRSYWLSTGQPIPMMPV*GNEIVTYISRCVVCEVPSNVIAVHSQ 322
D SYWLST +PMMP+ + + YISRC VCE V+AVHS+
Sbjct: 1533 DYSYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSK 1576
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 92 QDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLST-GQPIPMM---PV*GNEIV 259
Q LG +GSC+ F PF C C+Y + N S+WL+T P + ++
Sbjct: 1592 QSLGSSGSCLESFRPNPFTECHGRGTCHYYA-NKYSFWLATVNTPFQTQQSETLKAGNLL 1650
Query: 260 TYISRCVVC 286
+ +SRC VC
Sbjct: 1651 SRVSRCQVC 1659
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 305 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTG 397
I HSQT P CP + +LW GYS + G
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYSLLYVQG 1493
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 104 bits (249), Expect = 3e-23
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +2
Query: 200 YWLSTGQPIPMMPV*GNEIVTYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYS 379
YWLST +PMMP+ + + YISRC VCE V+AVHSQ+ +P CP GWS LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 380 FVMHTGAGGQG 412
F+MHTGAGG G
Sbjct: 62 FLMHTGAGGSG 72
Score = 57.6 bits (133), Expect = 4e-09
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 8 VPQCEPGHVKLWDGYS-LLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYAS 184
+P C G LW GYS L++ Q LG +GSC+ F PF+ C C+Y +
Sbjct: 46 LPTCPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECHGRGTCHYYA 105
Query: 185 RNDRSYWLST-GQPIPMM---PV*GNEIVTYISRCVVC 286
N S+WL+T P + +++ +SRC VC
Sbjct: 106 -NKYSFWLATVNTPFQTQQSETLKAGNLLSRVSRCQVC 142
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 99.5 bits (237), Expect = 9e-22
Identities = 38/64 (59%), Positives = 53/64 (82%)
Frame = +2
Query: 11 PQCEPGHVKLWDGYSLLYIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRN 190
P+C P + KLWDGYSLLY+ G++ +H QDLG AGSC+++F+TMP+L+C++ CNYASRN
Sbjct: 77 PECPPTYDKLWDGYSLLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRN 136
Query: 191 DRSY 202
D S+
Sbjct: 137 DYSH 140
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 305 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTG 397
I HSQT P CP + +LW GYS + G
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYSLLYVQG 97
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.5 bits (73), Expect = 0.070
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 245 GNEIVTYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 391
GN + + C VC VPS S L IP CP GWS + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 425 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSYYG 463
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.5 bits (68), Expect = 0.28
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTG 397
C VC VPS + + CP GWS + GY + G
Sbjct: 112 CAVCYVPSR--STQLMIPSVARCPTGWSREYYGYLIASYYG 150
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 391
C VC VPS S L IP CP GWS + GY H
Sbjct: 151 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC V S S L IPG CP GWS + GY H G
Sbjct: 225 CAVCYVSSR-----SAKLLIPGTNVCPAGWSREYHGYLMTAHRG 263
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 77 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTKYHG 115
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 30.7 bits (66), Expect = 0.50
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 GNEIVTYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
G + + C VC VPS S L IP CP GWS + GY + G
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEYYG 127
>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
Length = 558
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 84 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSYYG 122
>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
Length = 123
Score = 30.7 bits (66), Expect = 0.50
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 391 MHDKTVTNPQFTPSYWATWN 332
MH +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 701 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSYYG 739
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 82 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTDYYG 120
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 30.3 bits (65), Expect = 0.66
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 125 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEYYG 163
>SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 53 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTDYYG 91
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMHTG 397
C VC VPS S L IP CP GWS + GY + G
Sbjct: 198 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTDYYG 236
>SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7)
Length = 118
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 376
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 376
C VC VPS S L IP CP GWS + GY
Sbjct: 99 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 130
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 275 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 376
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 352 SYWA-TWNV*CLAVDSYNIRWHFAYNTSRNVCYYLISLHRH 233
+YW +W + CL++ + + W+ A N S + ++L++L H
Sbjct: 2252 TYWTISWLI-CLSMVTLSWIWNLAANVSNLLDHFLVNLSEH 2291
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 62 YIDGNEKAHNQDLGYAGSCVRKFSTMPFLFCDLNDVCNYASRNDRSYWLSTGQ 220
Y D + K + + G +G S PFL C L+ C A R S L T +
Sbjct: 364 YWDNSFKCFSTESGQSGCTRIATSPQPFLSCSLSFACLLAHRASVSLDLDTSK 416
>SB_18418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 162 LRSQKRNGIVLNFRTHEPAYPRSWLCAFSFPSIY 61
+R R I++ R+ A SW+ +F FPSIY
Sbjct: 127 VRPPHRGQILVTKRSVALAISSSWIFSFMFPSIY 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,981
Number of Sequences: 59808
Number of extensions: 301792
Number of successful extensions: 665
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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