Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O01
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   1.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    26   2.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   3.4  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   3.4  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   5.9  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 GTAAVL*PPTIRRPPMVQFPSSIKGT 378
           GTA +L P  +  P    FPSS  GT
Sbjct: 198 GTAKILPPKYVNSPDYTTFPSSFVGT 223


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 348 GPIPEFNKRHGATARAFSSPCLARTQWASARDSHRHSSYDGA 473
           GP+PE++    +T   +S   L      + R++H + + D +
Sbjct: 29  GPLPEYDSEEESTLPPYSDHALVNNPPNTHRENHSYGTTDNS 70


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 242 PTGASHHQESRSNP*WGIRKERRRF 316
           P  ++HHQ  R+NP  G R  ++RF
Sbjct: 339 PPFSAHHQARRNNP-QGFRNVKKRF 362


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 402 SPCLARTQWASARDSHRHSSYDGAIH 479
           +P LA+  W S  DS+ +SSY    H
Sbjct: 798 TPLLAQEIWQSLPDSYLNSSYQTPFH 823


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 312 GFITPNNSAAPHGPIPEFNKRHGATARAFSS 404
           G  TP++    H  +P+ N R   ++R FSS
Sbjct: 143 GHSTPHSKGDVHPGMPQHNTRFKQSSREFSS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,083
Number of Sequences: 5004
Number of extensions: 26942
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)