Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O01
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     29   2.0  
08_01_0045 + 322679-323347                                             29   2.6  
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380...    28   3.4  
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961...    28   3.4  
08_01_0255 + 2089543-2089583,2089696-2090089,2090797-2090862,209...    27   6.0  
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    27   7.9  
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    27   7.9  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     27   7.9  

>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 297 GRNGGGFITPNNSAAPHGPIPEFNKRHGATARAFSSPCLARTQWASARDSH 449
           G  G GF+ P  +AA    + +F  R GA + +         +WA A   H
Sbjct: 65  GATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHHHH 115


>08_01_0045 + 322679-323347
          Length = 222

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 269 SRSNP*WGIRKERRRFYNPQQFGGPPWSNSRVQ*KARGHST 391
           S S P W +    RR ++     G PW N+RV  + R H+T
Sbjct: 42  SSSPPVWLLSSPIRRSFSAADCSGSPWRNARVVLRRR-HAT 81


>04_03_0655 +
           18436363-18436901,18436984-18437772,18437952-18438028,
           18438034-18438248
          Length = 539

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 370 LLNSGIGPWGAAELLGVIKPPP 305
           L+N+ +G WG  EL   IKP P
Sbjct: 158 LINTAVGLWGVEELEVAIKPAP 179


>03_06_0570 -
           34794678-34795115,34795339-34795920,34796008-34796146,
           34796261-34796402,34796504-34796621,34796713-34796820,
           34796894-34796968,34797774-34798003,34798086-34798388,
           34798949-34799130,34800288-34800371,34800799-34801391
          Length = 997

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 471 HHRNWNVCGSRARSPTAFVLNTVTRTHVLWPRAFY*TRELDHGG 340
           +HR   VC   A++ TA V NTV R      R  Y  +  D+ G
Sbjct: 167 YHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRKSYIVKRRDYYG 210


>08_01_0255 +
           2089543-2089583,2089696-2090089,2090797-2090862,
           2091067-2091189,2091605-2091685,2091765-2091857,
           2092103-2092178,2092255-2092334,2092433-2092504,
           2092937-2092996,2093177-2093273,2093498-2093561,
           2093706-2093765,2093942-2094035
          Length = 466

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 318 ITPNNSAAPHGPIPEFNKRHGATARAFSSPCLARTQWASARDS 446
           + PN +  P  P    +    A+A AF+SP +A ++ A  R S
Sbjct: 15  VAPNEAKPPRYPQRNRSITASASASAFASPAVANSRVAKERPS 57


>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 321 TPNNSAAPHGPIPEFNKRHGATARAFSSPCLARTQWAS 434
           +P+ S  P  P P    +    + A SSP +AR+   S
Sbjct: 174 SPSPSPPPPAPAPSIRPKKALVSSASSSPAIARSSGGS 211


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 356 NWTMGGRRIVGGYKTAAVPSEYPIMGSSAIPGGA 255
           +WT       GG+ TAA P+     GS+ +P  A
Sbjct: 265 DWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAA 298


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 384 WPRAFY*TRELDHGGPPNCWGL 319
           W    Y  R + HGG  NCWG+
Sbjct: 631 WKLKKYDKRVVAHGGTLNCWGV 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,751
Number of Sequences: 37544
Number of extensions: 247211
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)