Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O01
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_8192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 27   6.1  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     27   8.0  
SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)                     27   8.0  

>SB_34157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 ARAFSSPCLARTQWASARDSHRHSSYDGA 473
           +R  SS CL  TQ  SAR   RHS  DGA
Sbjct: 167 SRRSSSTCLGITQRWSARSQRRHSE-DGA 194


>SB_8192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 309 GGFITPNNSAA-PHGPIPEFNKRHGATARAF 398
           GGF+  N S   P GPI +FN  H    +A+
Sbjct: 1   GGFVNLNPSGILPIGPIVDFNAPHDRDTKAY 31


>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 300 RNGGGFITPNNSAAPHGPIPEFNKRH 377
           RN GG I P+N    + P+ E N+RH
Sbjct: 289 RNEGGEIDPSNVTLLNQPLDEGNERH 314


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 387 ARAFSSPCLARTQWASARDSHRHSSYD 467
           ++ FS  C+A  QW SA+D  + S  D
Sbjct: 598 SKNFSQGCMAALQWNSAKDLDKMSKED 624


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 359 GNWTMGGRRIVGGYKTAAVPSEYPIMGSSAIPGG 258
           GNWT    R +G   +  +PSE   +G++ +  G
Sbjct: 213 GNWTASNLRDLGKIASGLLPSEIKQIGNTVLRAG 246


>SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)
          Length = 446

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 359 GNWTMGGRRIVGGYKTAAVPSEYPIMGSSAIPGG 258
           GNWT    R +G   +  +PSE   +G++ +  G
Sbjct: 23  GNWTASNLRDLGKIASGLLPSEIKQIGNTVLRAG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,827
Number of Sequences: 59808
Number of extensions: 234855
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)