Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_O01
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    30   0.76 
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   1.7  
Z48045-8|CAI46557.1|  331|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF408762-1|AAO27841.1|  242|Caenorhabditis elegans unknown prote...    27   5.3  
AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z69662-2|CAA93498.1|  440|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    27   7.0  

>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 311 AAVPSEYPIMGSSAIPGGAMRQSECACG 228
           A +P+  P  GSS + G   RQ+EC CG
Sbjct: 56  AMIPTTRPSSGSSFLLGRNKRQAECNCG 83


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 311 AAVPSEYPIMGSSAIPGGAMRQSECACG 228
           A +P+  P  GSS + G   RQ++C CG
Sbjct: 56  AMIPTTRPSSGSSFLLGRNKRQAQCNCG 83


>Z48045-8|CAI46557.1|  331|Caenorhabditis elegans Hypothetical
           protein C41C4.10 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 451 LWESRALAHCVRAKHGDENARAVAPCLLLNSGIGPWGAAELLGVIKPPPFLPNTPLW 281
           LWE++ L   +   H D   + + P  +  SG  P+G   + G++ P P  P    W
Sbjct: 74  LWEAQKLKSAIL--HPDTGEKVLPPFRM--SGFVPFGWITVTGMLLPNPSWPTLLFW 126


>AF408762-1|AAO27841.1|  242|Caenorhabditis elegans unknown protein
           protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 FITPNNSAAPHGPIPEFNKRHGATARAFSSP 407
           +ITPN   AP  P+P  +K+  A     SSP
Sbjct: 41  WITPNAQVAPKEPVPAPSKKKSAFEAYQSSP 71


>AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical
           protein F59H5.1 protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 FITPNNSAAPHGPIPEFNKRHGATARAFSSP 407
           +ITPN   AP  P+P  +K+  A     SSP
Sbjct: 557 WITPNAQVAPKEPVPAPSKKKSAFEAYQSSP 587


>Z69662-2|CAA93498.1|  440|Caenorhabditis elegans Hypothetical
           protein F56D5.2 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 433 LAHCVRAKHGDENA 392
           +AHC RA+ GDENA
Sbjct: 97  VAHCTRARLGDENA 110


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 305 VPSEYPIMGSSAIPGGAMRQSECACG 228
           +PS  P+   S + G   RQ++C CG
Sbjct: 65  IPSTRPVNAESLLLGRNKRQAQCNCG 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,172,652
Number of Sequences: 27780
Number of extensions: 170307
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)