Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N24
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   2.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   3.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.4  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    23   7.4  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    22   9.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    22   9.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    22   9.7  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 116 QFVFRGGNWVNLTNHWEY 63
           +F++ GG W  + NH +Y
Sbjct: 60  RFMYCGGTWNGIRNHLDY 77


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 119  FQFVFRGGNWVNLTNHWEYGNLSXHVSECRYALNGR 12
            FQF+    +W +L+N +    L+  +S C + LN R
Sbjct: 2312 FQFLLGSQHWESLSNTYWIVQLNIFLSRC-FDLNQR 2346


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 31  RHSETCXLRLPYSQWLVRLTQFPP 102
           RH     L   Y++W +R+   PP
Sbjct: 132 RHPRLFDLSSEYAKWQIRMGAVPP 155


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 23  VHSDTLKRVYLGYHIPSGWLG 85
           + SD++ ++ LG ++P GW G
Sbjct: 146 LQSDSIFKI-LGLNVPKGWKG 165


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 119 FQFVFRGGNWVNLTNHWEY 63
           F+F+F+G + +N   H +Y
Sbjct: 321 FEFIFKGFDALNYEEHVDY 339


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 95   NWVNLTNHWEYGNLSXHVSEC 33
            N+V     W++GN   H+  C
Sbjct: 1100 NFVANVFDWDFGNKDDHLGSC 1120


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  VHSDTLKRVYLGYHIPSGW 79
           +H DT K+++L  H   GW
Sbjct: 519 LHQDTEKKLHLEQHHLYGW 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,017
Number of Sequences: 5004
Number of extensions: 6749
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)