Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N24
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0613 + 19959206-19959700,19960210-19960657,19960753-199609...    27   2.8  
07_03_0619 + 20009837-20010331,20010437-20010875,20010974-200111...    26   4.9  
07_03_0618 + 19998470-19998970,19999079-19999517,19999617-199998...    26   4.9  
07_03_0617 + 19992304-19992798,19992926-19993364,19993457-199936...    26   4.9  
07_03_0616 + 19988392-19988734,19988755-19988891,19989021-199892...    26   4.9  
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252...    26   4.9  
03_02_0239 + 6705279-6705532,6705701-6706025,6706129-6706281,670...    26   4.9  
07_03_0621 + 20025998-20026492,20026598-20027036,20027135-200273...    25   6.5  
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318...    25   6.5  

>07_03_0613 +
           19959206-19959700,19960210-19960657,19960753-19960940,
           19961317-19961637
          Length = 483

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 50  YLGYHIPSGWL 82
           Y GYHIP GW+
Sbjct: 367 YQGYHIPKGWM 377


>07_03_0619 +
           20009837-20010331,20010437-20010875,20010974-20011161,
           20011315-20011620
          Length = 475

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 364 YRGYHIPKGW 373


>07_03_0618 +
           19998470-19998970,19999079-19999517,19999617-19999804,
           19999944-20000264
          Length = 482

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 366 YRGYHIPKGW 375


>07_03_0617 +
           19992304-19992798,19992926-19993364,19993457-19993644,
           19993806-19994123
          Length = 479

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 364 YQGYHIPKGW 373


>07_03_0616 +
           19988392-19988734,19988755-19988891,19989021-19989231,
           19989372-19989455,19989540-19989727,19989873-19990193
          Length = 427

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 311 YQGYHIPKGW 320


>07_03_0608 -
           19924065-19924367,19924517-19924704,19924791-19925229,
           19925357-19925851
          Length = 474

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 364 YRGYHIPKGW 373


>03_02_0239 +
           6705279-6705532,6705701-6706025,6706129-6706281,
           6709095-6709346,6709495-6709587,6710380-6710458,
           6710556-6710662,6711550-6711795
          Length = 502

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 23  VHSDTLKRV-YLGYHIPSGW 79
           +H   +K V Y GY IPSGW
Sbjct: 374 LHRKVIKDVHYKGYDIPSGW 393


>07_03_0621 +
           20025998-20026492,20026598-20027036,20027135-20027322,
           20027476-20027664
          Length = 436

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 50  YLGYHIPSGW 79
           Y GYHIP GW
Sbjct: 364 YHGYHIPKGW 373


>02_05_0567 +
           30029862-30030136,30030299-30030384,30031663-30031811,
           30032581-30032685,30032779-30032895,30033251-30033394,
           30033519-30033668
          Length = 341

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 61  PYSQWLVRLTQFPPRNTNWK 120
           P   W++R  +FPPR   W+
Sbjct: 28  PVPAWILRAVRFPPRFFLWR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,867,262
Number of Sequences: 37544
Number of extensions: 50593
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)