Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N24
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.1  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                25   9.5  

>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 89  VNLTNHWEYGNLSXHVSECRYALN 18
           ++++N W+YG+LS  +S  ++ LN
Sbjct: 422 IHMSNLWDYGDLSEVLSLAKHFLN 445


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 38  LKRVYLGYHIPSGWLG*PNFHR-ETQI 115
           L+++Y GYH    W   P ++R ET I
Sbjct: 168 LRKIYNGYHCKFDWFNDPYWNRIETAI 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,384,650
Number of Sequences: 59808
Number of extensions: 58576
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 16,821,457
effective HSP length: 21
effective length of database: 15,565,489
effective search space used: 295744291
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)