Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N23
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    44   8e-06
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    29   0.34 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   3.2  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   4.2  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   4.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   5.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   7.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   7.3  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 216 EADKGLQTSEDARFYALSRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKV 371
           + + GL   ++A  +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+
Sbjct: 87  KGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKL 139



 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 418 YEIMFGPDICG 450
           Y IMFGPD CG
Sbjct: 154 YRIMFGPDKCG 164


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 347 LRRRLPEGIRL*TGPEGHAWRDTLTRLCL 433
           ++R+ PE + L   P+G  W +T T +C+
Sbjct: 120 VQRKFPEAVDLDWSPQGIPWTETSTGICI 148


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 177 KFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNEGKPLVVQ 317
           K  LT    Y++   D G+       FY +     P S   +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = +3

Query: 96  VFFEEKFSDD--SWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL- 266
           VF E+  S+D  +W S W       K+ G + L      +    + GL T +  + + L 
Sbjct: 32  VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88

Query: 267 SRKFKPFSNEGK--PLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETP 416
           S    P + +    P+V+ F VK  +   CG  Y+ +   + + K++  E P
Sbjct: 89  SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPP 139


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 229 VYRHLKTRGSTPYRGNSSHSA 291
           ++R LKTRG+TP  G   HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 192 AGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNE 296
           A  F + +E+ KGL +SE    Y+L     P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 258  YALSRKFKPFSNEGKPLVVQFSVKHEQDIDCG 353
            Y +SRK  P       L + F  K     DCG
Sbjct: 960  YEVSRKINPLHQASTRLAIAFPDKRLLQYDCG 991


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -2

Query: 368 LQVTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVFRCL*TFIRLCVIV 204
           L    S   VLF LHT L      +   W  +P  G +P     +   + +C ++
Sbjct: 470 LSAALSLGTVLFCLHTFLCDSTVLMTWSWDGYPIKGPQPYPHGAVSIVVSICAVL 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,671
Number of Sequences: 5004
Number of extensions: 40612
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)