Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N23
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   140   3e-34
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   140   3e-34
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    48   4e-06
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   1.6  
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   2.1  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    28   3.8  
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical ...    27   6.6  
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    27   8.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  140 bits (340), Expect = 3e-34
 Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
 Frame = +3

Query: 87  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 266
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 267 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETP 416
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETP
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETP 123



 Score = 33.5 bits (73), Expect = 0.076
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 415 PYEIMFGPDICGP 453
           PY +MFGPDICGP
Sbjct: 123 PYNVMFGPDICGP 135


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  140 bits (340), Expect = 3e-34
 Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
 Frame = +3

Query: 87  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 266
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 267 SRKF-KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETP 416
           + KF K FSN+GK LV+Q++VKHEQ IDCGGGY+KV     D  D HGETP
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETP 123



 Score = 33.5 bits (73), Expect = 0.076
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 415 PYEIMFGPDICGP 453
           PY +MFGPDICGP
Sbjct: 123 PYNVMFGPDICGP 135


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 216 EADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSVKHEQDIDCGGGYLKV 371
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKL 159


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 402 ACPSGPVYSRIPSGNRLRSRCPVRASH*TVPPKVCPH 292
           +C S P+   I +GN    RCP  +S  +V P+  P+
Sbjct: 196 SCTSSPIPPVIMNGNGKSERCPSTSSSSSVSPRNAPN 232


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 163 PGCSLYTQFDSHESSEN-FSSKNTSQFID 80
           P C+L  QF+S E  +N     N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 148 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 35
           +T+F     ++NF SKN  +FID +   L+     D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
            protease protein39 protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 362  VTASAVDVLFVLHTELYHQRFALIAEWLEFPR*GVEPRVF 243
            +T++  ++L ++HT+   +    +AE+ E PR     R F
Sbjct: 894  ITSTGPELLLIMHTDNAEEEKGFVAEYREAPRSSSTKRTF 933


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 265 YRGNSSHSAMRAN--LWWYSSV*STNRTSTAEAVT*RYSTVDWTRRTCMAR 411
           YR N + S +R N   W   +V    + +T   V   + T+DW  R C++R
Sbjct: 316 YRHNKTRSKIRRNNIYWDLPNVAEKMKKATYYCV---HYTIDWVNRNCVSR 363


>AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical
           protein R11G11.6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 148 YTQFDS-HESSENFSSKNTSQFIDEIAN 68
           YT +    + +ENF SKNT+Q I ++++
Sbjct: 67  YTAYTKKQQDNENFMSKNTTQIISQLSS 94


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 358 PPPQSMSCSCFTLNCTTKGLPSLLNGLN 275
           PPP +    C   NCT  G P  L+ LN
Sbjct: 260 PPPTTTPNPCLAFNCTGSG-PCQLDSLN 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,936
Number of Sequences: 27780
Number of extensions: 239701
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)