Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N22
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    28   0.29 
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   0.67 
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    24   6.3  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    24   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   6.3  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    23   8.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   8.3  

>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 126 CIRRTSHQSGHADSRVSTLAADV--TAPGVAEQLVAGADLL 242
           CI   ++  GH DS V  L+ D     P + E++ AGAD +
Sbjct: 147 CIGVAAYPEGHVDSNVPELSKDPLRDIPFLIEKVEAGADFI 187


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 4  KHEGDCERAGGGFLG 48
          K +G CE  GGGF+G
Sbjct: 28 KEDGTCESVGGGFIG 42


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/35 (28%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 93  LRISGAAFNGMCIRRTSHQSGHADSR-VSTLAADV 194
           ++++ A F+   IRR+SH +G+  S+ ++ L++++
Sbjct: 35  VQLAKAPFSFSSIRRSSHTAGNPRSKLINALSSEI 69


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 137 SSDAHPVKSSARDSQRQLRFPIE*LSETELPRNPPPARSQ 18
           S  A+P    + DS+ + + P +       P  P P  +Q
Sbjct: 9   SKKANPANEKSNDSKSEAKAPKKGAKTKSTPSRPKPTNNQ 48


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 268 PLTTPAK*NSKSAPATSCSATPGAVTSAARVETRESACPL 149
           P+T+P   +S S   +  S TP   TS ++V T  ++ PL
Sbjct: 603 PITSPNSTSSSSTQVSWNSTTPITGTSTSKV-TSSTSIPL 641


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 37  GFLGSSVSLNYSIGKRSCLCESRALLLTGCASD 135
           GFL    +   SI   S LC S +L+   C +D
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFTD 443


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 173 DARVRMSALVRGSSDAHPVKSSARDSQR 90
           D   R +   R +S  +PV +++ DSQR
Sbjct: 256 DHNTRTTTWTRPASSTNPVHNTSSDSQR 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,208
Number of Sequences: 5004
Number of extensions: 15258
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)