Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N21
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    31   0.14 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   0.97 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.0  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   5.2  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   6.8  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   9.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   9.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 332 FGRMFKITFWS*IIFWPNLSWSISWLPLSFWSIVKFAVRM*IVFRFNLIRSFR 174
           F  +F  T++  II W N +WS+  LP+  W ++ F++   +  R  ++ S +
Sbjct: 301 FSLLF-FTYYGTIIPWNNFNWSVEGLPV--WRLIVFSILTLVCRRLPVVFSVK 350


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 341 ANQERHQLKYVLKII*NLKVNLK-GLRDLNGQHQERTEQIRTKEHLHQEINFQD 499
           A QE ++  YV+++    + + K  LR+++ Q     E I + E L  E+NF D
Sbjct: 599 AAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESIESDEALKSEMNFSD 652


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 392  LKVNLKGLR-DLNGQHQERTEQIRTKEHLHQEINFQDKPKGHWQP 523
            L +N+K  + DLN    + + ++ +  HL   +NF +    HW+P
Sbjct: 1705 LNINIKPFQVDLN----DWSSELNSNAHLELFMNFYNFSNSHWEP 1745


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 69  KPKWQPGETPAQVRPKDNLKPE--GDFDRPQKTKWTSSERPDQVK 197
           K K QP     + RP+  ++PE  G        KW+   R D +K
Sbjct: 44  KRKKQPARKQIETRPEYEMEPEQPGQVYNLWYNKWSGGMRQDPLK 88


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -1

Query: 199 GLT*SGLSEDVHLVF*GLSKSPSGFKLSLGRTWAGVSPGCHLGLEGCSNS 50
           GLT  GL + +  V     K  +G  + L  T  G+SP   LG+ G S+S
Sbjct: 168 GLTVIGLRQWLARVIPASLKFATGAGIGLYLTIIGLSPSAGLGVIGHSSS 217


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 3    DTPAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLK--PEGDFDRPQKTKWTSS 176
            D P  + P +N   +G  E+PS   + P     +V   DN+K  P  D    + T  +S 
Sbjct: 944  DVPHLLDPDNNFNLKGNPENPSSTFFTPEILSPKVY-SDNVKDEPVEDIFGFEDTSESSP 1002

Query: 177  ERPDQVK 197
             +P Q++
Sbjct: 1003 GKPSQLR 1009


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 61  ILPNLNGNQEKPQPKCVLKII*NLRVISIDLKKLNGHPLKDRIKLNRKTIYIRTA--NFT 234
           I P +NGN   P P   L  + N  +I   L++  G    +      K I I  A  NF 
Sbjct: 12  IKPPMNGNPYGPNPSDFLSRVNNFSIIESTLRE--GEQFANAFFDTEKKIQIAKALDNFG 69

Query: 235 ID 240
           +D
Sbjct: 70  VD 71


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 112 LKII*NLRVISIDLKKLN---GHPLKDRIKL 195
           L+++    +I  DLK  N    HPLK RIKL
Sbjct: 632 LRLLQGQNIIHCDLKPENLLLSHPLKARIKL 662


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 184 GLSEDVHLVF*GLSKSPSGFKLSLGRTW 101
           GL E V LVF  ++   SGF ++  R W
Sbjct: 213 GLGEKVGLVFFAIATFVSGFVIAFIRHW 240


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  KFDQRTT*SHKVNLNILPNLNGNQEKPQPK 105
           KFD+R   S K   N++P+ + N    QP+
Sbjct: 22  KFDKRPFASQKFPENLVPDNSSNDANSQPE 51


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 488 LFPGVSALWSLFVQFFPDVVHLDL*DLSN 402
           LF  +  + SLF+ FFP +V   +  L+N
Sbjct: 212 LFHSIDKITSLFIHFFPPLVLHTIVHLTN 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,284
Number of Sequences: 5004
Number of extensions: 48395
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)