Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N21
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 47 9e-06
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 40 0.001
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 37 0.009
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 31 0.62
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP... 31 0.62
At1g06190.1 68414.m00651 expressed protein 29 1.9
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ... 29 2.5
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i... 28 3.3
At2g29800.1 68415.m03620 kelch repeat-containing F-box family pr... 28 4.4
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.4
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 5.8
At5g43175.1 68418.m05270 basic helix-loop-helix (bHLH) family pr... 27 5.8
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 27 7.7
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 27 7.7
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 7.7
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 27 7.7
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 46.8 bits (106), Expect = 9e-06
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = +3
Query: 6 TPAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERP 185
TP PK + P E PSKPK P E+P +P KPE P K E P
Sbjct: 414 TPKAPEPKKEINPPN-LEEPSKPK--PEESPKPQQPSP--KPETPSHEPSNPKEPKPESP 468
Query: 186 DQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPK-DNLRPEGDFEHPSKPK 338
Q PK + ++ Q P Q +PK ++ + E + P KP+
Sbjct: 469 KQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPE 520
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +3
Query: 39 KPQGEFEHPSKPKWQPGETPAQVRPK-DNLKPEGDFDRPQKTKWTSSERPDQVKPK-DNL 212
KP+ PS PK E+P Q PK + KP+ + + + K + +P+Q KPK ++
Sbjct: 449 KPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPKQESPK-QEAPKPEQPKPKPESP 507
Query: 213 HPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPSKPK 338
+ + PK + P P +P+++ +P+ + KP+
Sbjct: 508 KQESSKQEPPKPEESPKPEPP--KPEESPKPQPPKQETPKPE 547
Score = 32.3 bits (70), Expect = 0.20
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Frame = +3
Query: 3 DTPAQVRPKDNL-KPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEG----DFDRPQKTKW 167
++P Q PK KP+ P PK Q +P+++ KPE + +PQ K
Sbjct: 483 ESPKQESPKQEAPKPEQPKPKPESPK-QESSKQEPPKPEESPKPEPPKPEESPKPQPPKQ 541
Query: 168 TSSERPDQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPE 308
+ + + KP+ + + PK Q +TP +P+++ +P+
Sbjct: 542 ETPKPEESPKPQPPKQETPKPEESPKPQPPKQETP---KPEESPKPQ 585
Score = 31.1 bits (67), Expect = 0.47
Identities = 22/95 (23%), Positives = 38/95 (40%)
Frame = +3
Query: 9 PAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERPD 188
P +P+++ KPQ + KP+ E+P PK + +PQ K + + +
Sbjct: 525 PEPPKPEESPKPQPPKQETPKPE----ESPKPQPPKQETPKPEESPKPQPPKQETPKPEE 580
Query: 189 QVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKD 293
KP+ + PK P ++P P D
Sbjct: 581 SPKPQPPKQEQPPKTEAPKMGSPPLESPVPNDPYD 615
Score = 29.1 bits (62), Expect = 1.9
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 DTPAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSER 182
++P Q K E P PK P E+P PK + +PQ K E
Sbjct: 505 ESPKQESSKQEPPKPEESPKPEPPK--PEESPKPQPPKQETPKPEESPKPQPPK---QET 559
Query: 183 PDQVKPKDNLHPDGEFYDRPKTQWQP-GDTPAQIRPKDNLRPE 308
P KP+++ P + PK + P P Q +P P+
Sbjct: 560 P---KPEESPKPQPPKQETPKPEESPKPQPPKQEQPPKTEAPK 599
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 39.9 bits (89), Expect = 0.001
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Frame = +3
Query: 9 PAQVRPKDNLKPQGEF--EHPSKPKWQPG--ETPAQVRP--KDNLKPEGDFDRPQKTKWT 170
P +P D+ KP+ E PS PK QP E+P P K L + + +PQ +K
Sbjct: 411 PVMPKPSDSSKPETPKTPEQPS-PKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPE 469
Query: 171 SSERPDQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKD--NLRPEGDFEHPSKPK 338
S +P+Q KP+++ P+ P P + P D + P + P PK
Sbjct: 470 DSPKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPVKNRRSPPPPK 527
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 36.7 bits (81), Expect = 0.009
Identities = 30/110 (27%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Frame = +3
Query: 9 PAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTK-WTSSERP 185
P V+P P HP P +P P PK KP +P TK S+ +P
Sbjct: 94 PPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKP 153
Query: 186 DQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPSKP 335
KP P P P TP I P P P+ P
Sbjct: 154 PHHKPPPTPCPPPTPTPTPPVVTPPTPTPPVITPPTPTPPVVTPPTPTPP 203
Score = 30.3 bits (65), Expect = 0.82
Identities = 23/89 (25%), Positives = 29/89 (32%)
Frame = +3
Query: 6 TPAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERP 185
TP K + KP HP P +P P V+P P P+ +P
Sbjct: 64 TPKPPTVKPHPKPPTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKP 123
Query: 186 DQVKPKDNLHPDGEFYDRPKTQWQPGDTP 272
PK P +P T P TP
Sbjct: 124 PPSTPKPPTKPPPS-TPKPPTTKPPPSTP 151
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 30.7 bits (66), Expect = 0.62
Identities = 32/110 (29%), Positives = 34/110 (30%)
Frame = +3
Query: 9 PAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERPD 188
PA PK P P KPK P TP + +PK P P T P
Sbjct: 24 PAPKPPKPKPAPAPT---PPKPKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPA 80
Query: 189 QVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPSKPK 338
PK P T P TPA PK P KPK
Sbjct: 81 PTPPKPKPKP-------APTPPNPKPTPAPTPPKPKPAPAPAPTPAPKPK 123
>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1367
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 63 PSKPKWQPGET-PAQVRPKDNLKPEGDFDRPQKTKWTSSERPDQVKPKDNLHPDGEFYDR 239
P+ P + ET P+ + D LK TS+ + V D LHPDG DR
Sbjct: 801 PNNPIFSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSSDVHQPDALHPDG---DR 857
Query: 240 PK 245
P+
Sbjct: 858 PR 859
>At1g06190.1 68414.m00651 expressed protein
Length = 401
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 132 EGDFDRPQKTKWTSSERPDQVKPKDNLH--PDGEFYDRPKTQWQPGDTPAQIRPKDNLRP 305
E FD+ T +++ D V+ D P E P+ + +PG + P L+P
Sbjct: 251 EATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHEHEPENESEPGPVTTMLEPDSELKP 310
Query: 306 E 308
E
Sbjct: 311 E 311
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 39 KPQGEFEHPSKPKWQPGETPAQVRPKDNLKPE 134
+P E EH + + +PG + P LKPE
Sbjct: 280 EPAYEHEHEPENESEPGPVTTMLEPDSELKPE 311
>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
MAP3K epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1368
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 63 PSKPKWQPGETPA--QVRPKDNLKPE-GDFDRPQKTKWTSSERPDQVKPKDNLHPDGE 227
P+ P + ET + + D LK G + P ++S+R D +P D LHPDG+
Sbjct: 793 PNNPIFGQNETSSLSMIDQPDVLKTRHGGGEEPSHASTSNSQRSDVHQP-DALHPDGD 849
>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
thaliana] GI:22212705; contains Pfam profile PF03031: NLI
interacting factor
Length = 1241
Score = 28.3 bits (60), Expect = 3.3
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = +3
Query: 69 KPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERPD-QVKPKDNLHPDGEFYDRPK 245
K K + ETP Q+ P+ N+ G + S + PD + NL D
Sbjct: 777 KGKAEDLETPPQLDPRQNISQNGTSKMKISGELLSGKTPDFSTQFTKNLK---SIADMVV 833
Query: 246 TQWQPGDTPAQIRPKDNLRPEGDFEH-PSKPKWQ 344
Q G+ PA + L+ E D +H PS P Q
Sbjct: 834 VSQQLGNPPASMH-SVQLKTERDVKHNPSNPNAQ 866
>At2g29800.1 68415.m03620 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 414
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 120 NLKPEGDFDRPQKTKWTSSERPDQVKPKDNLHPDGEFYDRP 242
N KPE PQ+ K +E P++ +D+ H D E + P
Sbjct: 18 NQKPEEPHKNPQEEKENQNENPNEADEEDD-HQDEEVENVP 57
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 4.4
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Frame = +3
Query: 21 RPKDNLKPQGEFEH--PSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERPDQV 194
R +PQ +H P +P++ + P N +P G FD + S+ RP
Sbjct: 330 RDASRFEPQSPNQHVNPQRPRFS-NQAP-------NQQPTGRFDPQSPNQPPSAPRPQFP 381
Query: 195 KPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPSKPK 338
+ D +F +P P P Q + P+ + PS P+
Sbjct: 382 NQQPTGRFDPQFPSQPPRPQFPNQAPNQ-QSTGRFNPQFPNQRPSPPQ 428
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 15 QVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKPEGDFDRPQKT 161
Q P LKPQ E P + QP P P GDF+RP+ +
Sbjct: 1529 QEPPMGKLKPQNIKEEPFQ---QPLSNMDGWLPHRQFPPSGDFERPRSS 1574
>At5g43175.1 68418.m05270 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 156 KTKWTSSERPDQVKP--KDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRPEGDFEHPS 329
+T R D +KP K L + PKT W+ G + + D+ + G + S
Sbjct: 66 QTNRNVDSRQDLLKPRKKQKLSSESNLVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTS 125
Query: 330 K 332
K
Sbjct: 126 K 126
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 141 FDRPQKTKWTSSERPDQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQIRPKDNLRP 305
+D+ +K+ KPK + P D+P + + P P + RPK RP
Sbjct: 126 YDQKRKSNQVKQRTSGMQKPKRSSTPKPTESDKPASSYGP-TPPPEPRPKRRPRP 179
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 174 SERPDQVKPKDNLHPDGEFYDRPKTQWQPGDTPAQ 278
S +PD P HP+G Y+ Q P D Q
Sbjct: 547 SPQPDSTMPTSQFHPNGNSYESYHHQAAPTDLNMQ 581
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 9 PAQVRPKDNLKPQGEFEHPSKPKWQPGETPAQVRPKDNLKP 131
P RP P F++PS PG P Q +P+ ++P
Sbjct: 76 PPPFRPGMQFTPVANFQNPSSGVPPPGSMP-QYQPQPGMRP 115
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 PSK-PKWQPGETPAQVRPKDNLKPEGDFDRPQKTKWTSSERPDQVKPKDNLHPDGEFYDR 239
P+K P+ + E P + + K EG+ + + K + + ++ K + +GE D+
Sbjct: 70 PAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQ 129
Query: 240 PKTQWQP 260
P+ Q QP
Sbjct: 130 PQAQPQP 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,638,278
Number of Sequences: 28952
Number of extensions: 256930
Number of successful extensions: 709
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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